Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2203 TTCTTTTCCAATCTGTGGATCCTTTGTTGCAATTATTGGTTCTTTTTAGAGGCATCAACGAATCAGGAATTGAATCAGAGGATTCCGTTGTTCAAACTTCCCTCGAAGATCCTTTGTCGCGTCGTGAACATTCATTTACTGGCTGAACAAGAAACTGATGAGGTTTATGCACAGATTACTTTGGTGCCGGAATCTAATCAAGCTGATGAGCCTACGAGCCCCGATCCGTCCCCTGCTGAACCAACAAGGCCCACAGTTCACTCGTTCTCCAAAGTTTTAACTGCTTCAGATACCAGCACCCATGGCGGCTTTTCTGTTCTCAGGAAACATGCCACAGAGTGCCTTCCTGCTTTGGACATGTCCCAACCAACACCGACTCAGGAATTGGTTGCGAAGGATCTTCATGGTTATGAATGGCGCTTCAAGCATATATTTCGAGGTCAACCACGCAGACACTTGCTCACAACAGGGTGGAGTACTTTTGTGACTTCCAAAAGATTGGTTGCTGGAGACACCTTTGTATTCTTGAGAGGGCAGAATGGGGAATTGCGCGTAGGAGTGCGCCGTCTTGCTCGTCAGCAGAGTAACATGCCATCATCTGTAATTTCCAGTCAGAGCATGCACCTCGGTGTGCTTGCTACTGCCTCTCATGCTGTTGCTACTCAGACACTTTTCGTAGTTTATTATAAGCCACGCACGAGCCAGTTCATCATCAGCCTCAACAAGTATTTGGATGCTGTCAACAACAAATTTAGTGTTGGGATGAGGTTTAAGATGAGGTTCGAAGGGGATGATTCTACAGACACTGATAAAAGATTTTCGGGTACCATTGTTGGATTGGAAGATATATCTCCTCATTGGGAAAATTCTAAATGGCGATCACTCAAGGTTCAATGGGATGAACCTGCAGCTGTTCCAAGACCTGATAGGGTTTCCCCATGGGAGATGGAACCCTACGTGGCTCCTGCTCTTACATCCTCAGTTCAACCTGCTGTTGTAAAGGCCAAAAGGCCTCGACCACCAAGTGAACATCCCGATCTCGATACCCAATCGGCTACCTCAGTTTTCTGGGATTCAGGTCTAACACAGGCTGATATGACACAGCATAGTGTGATGGCCGAAAGTAAAAGGAGTGATACTACCAGCGTGTGGCATCATAAGCAGATCGATATGAATAGTAAAAGCAACAGCAATCTGATGTCAAGGAATCAGACAGAAGGAAGTTGGCTATCTTCCCCCCATTCTTCTTGTCCTTCGCAATTATTTCAGGACACAATGGATGACAGCAAGAGCGTCTCAGCTTGGCCTGCTCCAAATCCACACTCGTCTAGATTGAACAATGATCATGTGCATGATCAGGTTGACAAGGAAAACAAAGCTGAGACTGCTACGAGTTGTCGACTTTTTGGCATTGACCTTATTGATCATTCCCGGAACTCGTCTGCTGTAGAGAAGGCGGCTGCACAGGCGGTAAACGTTCACAGTTTCACCTCTGAAGGCTGTGTGAGCACAGTTTCCAAAACTGAGGCAGGTCAAAAGTCTGATGCCTCGAAGACTGGTAAGGAGAAGAAACAAGAGCAGCAGCAAGTATCGCCAAAAGAGAGTCAGAGCAAGCAAATATGTAGCAGAAGTCGCACCAAGGTTCAAATGCAGGGTGTCGCAGTAGGTCGTGCCGTGGATCTGACTATGTTGGATGGCTATGAGCATCTTATTGTTGAATTGGAGGAGTTGTTCGACATAAAAGGGCAGCTTCAAGACAGGAATAAGTGGGAAATTGTCTTCACTGATGATGAGGGAGATATGATGCTGGTGGGAGACGATCCATGGCCTGAATTCTGCCACATGGTTAGGAGAATTTTTATCTGTTCCAGTCAAGATGTGAAGAAGATGAGCACAGGAAGCAAACTACCAATCTCTTCAATCGAAGAAGGCACTGTAATAAGTTCAGAAACTGCTGAAACATGA 1965 0.4601 FFSNLWILCCNYWFFLEASTNQELNQRIPLFKLPSKILCRVVNIHLLAEQETDEVYAQITLVPESNQADEPTSPDPSPAEPTRPTVHSFSKVLTASDTSTHGGFSVLRKHATECLPALDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGQNGELRVGVRRLARQQSNMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIISLNKYLDAVNNKFSVGMRFKMRFEGDDSTDTDKRFSGTIVGLEDISPHWENSKWRSLKVQWDEPAAVPRPDRVSPWEMEPYVAPALTSSVQPAVVKAKRPRPPSEHPDLDTQSATSVFWDSGLTQADMTQHSVMAESKRSDTTSVWHHKQIDMNSKSNSNLMSRNQTEGSWLSSPHSSCPSQLFQDTMDDSKSVSAWPAPNPHSSRLNNDHVHDQVDKENKAETATSCRLFGIDLIDHSRNSSAVEKAAAQAVNVHSFTSEGCVSTVSKTEAGQKSDASKTGKEKKQEQQQVSPKESQSKQICSRSRTKVQMQGVAVGRAVDLTMLDGYEHLIVELEELFDIKGQLQDRNKWEIVFTDDEGDMMLVGDDPWPEFCHMVRRIFICSSQDVKKMSTGSKLPISSIEEGTVISSETAET* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2203 654 MobiDBLite consensus disorder prediction 507 543 - -
Amo02g2203 654 Pfam B3 DNA binding domain 89 189 IPR003340 GO:0003677
Amo02g2203 654 Gene3D - 539 631 - -
Amo02g2203 654 ProSiteProfiles PB1 domain profile. 543 624 IPR000270 GO:0005515
Amo02g2203 654 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 643 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo02g2203 654 CDD B3_DNA 87 189 IPR003340 GO:0003677
Amo02g2203 654 SMART B3_2 89 191 IPR003340 GO:0003677
Amo02g2203 654 MobiDBLite consensus disorder prediction 393 418 - -
Amo02g2203 654 Pfam AUX/IAA family 403 627 IPR033389 -
Amo02g2203 654 SUPERFAMILY CAD & PB1 domains 543 619 - -
Amo02g2203 654 PANTHER AUXIN RESPONSE FACTOR 16 643 - -
Amo02g2203 654 Gene3D - 250 323 - -
Amo02g2203 654 Gene3D - 86 190 IPR015300 -
Amo02g2203 654 Pfam Auxin response factor 215 296 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Amo02g2203 654 MobiDBLite consensus disorder prediction 514 529 - -
Amo02g2203 654 MobiDBLite consensus disorder prediction 65 86 - -
Amo02g2203 654 SUPERFAMILY DNA-binding pseudobarrel domain 80 218 IPR015300 -
Amo02g2203 654 ProSiteProfiles B3 DNA-binding domain profile. 89 191 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2203 Amo-Chr2 72475435 72480362 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g2203 1 636 B3 DNA Binding Superfamily AT4G23980 56.278 0.0 668
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Amo02g2203 AUX_IAA 6e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g2203 K14486 - gmx:100779003 1053.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g2582 14 109433416 109438131 Amo02g2203 02 72475435 72480362 PCT
Amo04g1505 04 71011309 71016108 Amo02g2203 02 72475435 72480362 PCT
Amo02g2203 02 72475435 72480362 Amo14g2582 14 109433416 109438131 PCT
Amo02g2203 02 72475435 72480362 Amo04g1505 04 71011309 71016108 PCT