Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2202 TGGAACGCCTGTTTGGGCCATCAAATCTCAGCAAAATTAGAGGCATCAACGAATCAGGAATTGAATCAGAGGATTCCGTTGTTCAAACTTCCCTCGAAGATCCTTTGTCGCGTCGTGAACATTCATTTRCTGGCTGAACAAGAAACTGATGAGGTTTATGCACAGATTACTTTGGTGCCGGAATCTAATCAAGCTGATGAGCCTACGAGCCCCGATCCGTCCCCTGCTGAACCAACAAGGCCSACAGTTCACTCGTTCTCCAAAGTYTTAACTGCYTCAGATACCAGCACCCATGGCGGCTTTTCTGTTCTCAGGAAACATGCCACAGAATGCCTTCCTGCTTTGGACATGTCCCAACCAACACCGACTCAGGAATTGGTTGCGAAGGATCTTCATGGTTATGAATGGCGCTTCAAGCATATATTTCGAGGTCAACCACGCAGACACTTGCTCACAACAGGGTGGAGTACTTTTGTGACTTCCAAAAGATTGGTTGCTGGAGACACCTTTGTATTCTTGAGAGGGCAGAATGGGGAATTGCGCGTAGGAGTGCGCCGTCTTGCTCGTCAGCAGAGTAACATGCCATCATCTGTAATTTCCAGTCAGAGCATGCACCTCGGTGTGCTTGCTACTGCCTCTCATGCTGTTGCTACTCAGACACTTTTCGTAGTTTATTAYAAGCCACGCACGAGCCAGTTCATCATCAGCCTCAACAAGTATTTGGATGCTGTCAACAACAAATTTAGTGTTGGGATGAGGTTTAAGATGAGGTTCGAAGGGGATGATTCYACAGACACTGATAAAAGATTTTCGGGTACCATTGTTGGATTGGAAGATATATCTCCTCATTGGGAAAATTCTAAGTGGCGATCACTTAAGGTTCAATGGGATGAACCTGCAGCTGTTCCAAGACCTGATAGGGTTTCCCCATGGGAGATGGAACCCTACGTGGCTCCTGCTCTTACATCCTCAGTTCAACCTGCTGTTGTAAAGGCCAAAAGGCCTCGACCACCAAGTGAACATCCCGATCTCGATACCCAATCGGCTACCTCAGTTTTCTGGGATTCAGGTCTAACACAGGCTGATATGACACAGCATAGTGTGATGGCCGAAAGTAAAAGGAGTGATACTACCAGCGTGTGGCATCATAAGCAGATCGATATGAATAGTAAAAGCAACAGCAATCTGATGTCAAGGAATCAGACAGAAGGAAGTTGGCTATCTTCCCCCCATTCTTCTTGTCCTTCGCAATTATTTCAGGACACAATGGATGACAGCAAGAGCGTCTCAGCTTGGCCTGCTCCAAATCCACACTCGTCTAGATTGAACAATGATCATGTGCATGATCAGGTTGACAAGGAAAACAAAGCTGAGACTGCTACGAGTTGTCGACTTTTTGGCATTGACCTTATTGATCATTCCCGGAACTCGTCTGCTGTAGAGAAGGCGGCTGCACAGGCGGTAAACATTCACAGTTTCACCTCTGAAGGCTGTGTGAGCACAGTTTCCAAAACCGAGGCAGGTCAAAAGTCTGATGCCTCGAAGACTGGTAAGGAGAAGAAACAAGAGCAGCAGCAAGTATTGCCAAAAGAGACTCAGAGCAAGCAAATATGTAGCAGAAGTCGCACCAAGGTTCAAATGCAGGGTGTCGCAGTAGGTCGTGCCGTGGATCTGACTATGTTGGATGGCTATGAGCATCTTATTGTTGAATTGGAGGAGTTGTTCGACATAAAAGGGCAGCTTCAAGACAGGAATAAGTGGGAAATTGTCTTCACTGATGATGAGGGAGATATGATGCTGGTGGGAGACGATCCATGGCCTGAATTCTGCCACATGGTTAGGAGAATTTTTATCTGTTCCAGTCAAGATGTGAAGAAGATGAGCACAGGAAGCAAACTACCAATCTCTTCAATCGAAGAAGGCACTGTAATAAGTTCAGAAACTGCTGAAACATGA 1956 0.4617 WNACLGHQISAKLEASTNQELNQRIPLFKLPSKILCRVVNIHLLAEQETDEVYAQITLVPESNQADEPTSPDPSPAEPTRPTVHSFSKVLTASDTSTHGGFSVLRKHATECLPALDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGQNGELRVGVRRLARQQSNMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIISLNKYLDAVNNKFSVGMRFKMRFEGDDSTDTDKRFSGTIVGLEDISPHWENSKWRSLKVQWDEPAAVPRPDRVSPWEMEPYVAPALTSSVQPAVVKAKRPRPPSEHPDLDTQSATSVFWDSGLTQADMTQHSVMAESKRSDTTSVWHHKQIDMNSKSNSNLMSRNQTEGSWLSSPHSSCPSQLFQDTMDDSKSVSAWPAPNPHSSRLNNDHVHDQVDKENKAETATSCRLFGIDLIDHSRNSSAVEKAAAQAVNIHSFTSEGCVSTVSKTEAGQKSDASKTGKEKKQEQQQVLPKETQSKQICSRSRTKVQMQGVAVGRAVDLTMLDGYEHLIVELEELFDIKGQLQDRNKWEIVFTDDEGDMMLVGDDPWPEFCHMVRRIFICSSQDVKKMSTGSKLPISSIEEGTVISSETAET* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2202 651 ProSiteProfiles PB1 domain profile. 540 621 IPR000270 GO:0005515
Amo02g2202 651 PANTHER AUXIN RESPONSE FACTOR 12 640 - -
Amo02g2202 651 SUPERFAMILY CAD & PB1 domains 541 616 - -
Amo02g2202 651 SMART B3_2 86 188 IPR003340 GO:0003677
Amo02g2202 651 Gene3D - 536 628 - -
Amo02g2202 651 ProSiteProfiles B3 DNA-binding domain profile. 86 188 IPR003340 GO:0003677
Amo02g2202 651 MobiDBLite consensus disorder prediction 511 526 - -
Amo02g2202 651 Pfam Auxin response factor 212 293 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Amo02g2202 651 MobiDBLite consensus disorder prediction 62 83 - -
Amo02g2202 651 Pfam AUX/IAA family 581 624 IPR033389 -
Amo02g2202 651 Pfam AUX/IAA family 400 576 IPR033389 -
Amo02g2202 651 MobiDBLite consensus disorder prediction 504 540 - -
Amo02g2202 651 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 640 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo02g2202 651 SUPERFAMILY DNA-binding pseudobarrel domain 77 215 IPR015300 -
Amo02g2202 651 Gene3D - 247 320 - -
Amo02g2202 651 Gene3D - 83 187 IPR015300 -
Amo02g2202 651 CDD B3_DNA 84 186 IPR003340 GO:0003677
Amo02g2202 651 Pfam B3 DNA binding domain 86 186 IPR003340 GO:0003677
Amo02g2202 651 MobiDBLite consensus disorder prediction 390 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2202 Amo-Chr2 72469974 72475392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g2202 6 633 B3 DNA Binding Superfamily AT4G23980 58.268 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Amo02g2202 AUX_IAA 3.4e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g2202 K14486 - gmx:100779003 1064.29