Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2190 ATGGATATTCTTAACTCCATGATTATCGTTGCATACTTATTACTTGTTTCCTCTGTCACAGTTTCCATGGCAGTCAATGATTCAATAGGTGTGTCCAAGTCTATCAGTGATGATGGCAATGGCAAAACCATAGTGTCCAAAGATGGAGTATTTGAGCTTGGCTTCTTCAGCCCCGGCAGTTCAATGAAGCGTTACCTGGGGATTTGGTACAAGAAAATTTCCATGTATAGTGTTGTTTGGGTTGCCAATAGGGACAAACCCATCGATTTTGTCTCAGCTGGAATATTAACATTGGACATCACTGGGAATCTTATCCTTACCCAAAATGATTCTGTTGTTTGGAGCACAAACTCTCAAAGACAAGCACAGAATCCAGTGGCACAGCTCATGGACAGCGGCAATCTTGTGGTATGGAATCATGGGGGTCCAAACTCACAAGATATTTTGTGGCAAAGCTTTGACTATCCGTCAGATACGATACTGCCAGGAATGAAGGTGGGATGGGACCTCAAACGAGGTCTCGAATGGCGAATAACATCTTGGAAGAGTCCAAATGATCCAGCTCCTGGAGATTTCTCATGGGGTTTAGTGCTCAACGAATATCCTGACTTTTATATGAAAGGACGAACAACGCTCAACCGGTTTGGACCATGGAATGGCATTTATTTCAGTGGCTTCCGAGATCAAAATCCAAGCTCTGTTTATGAATTCACATATGTCACTAGCTATGATGCCAAGTTTCCCTCCAATAAGGATGAGATTTATTACACGTATACTTTAAAGAATACTTCTATCTTGTCGAGAGTCCACCTAGACCAAACTGGTGGCTTTAATTTCTATATTTGGGCAGAAGAAGATCAGCAATATTGGGAGCTCTATGAGATGTACTCATCCAGAGACCAGTGTGATGATTATGGCGTTTGTGGGTCAAACTCAAAATGCTTAATTGATGAATCACCAATGTGCCAATGTTTAGAAGGTTTCAGTCCCAAGTCACCACAAGAATGGGACATGAGGGGTTGGACAAAAGGATGTGTCCGGACTAAACCCTTAACCTGCAATGACATTTCCATCAATGACATTTTTGTCAAATTTGCAGACTTGAAAGTTCCAGATACTACACATACATGGTTGGATGAGAATATGGGTCTAGATGAATGCAGAGCAAGGTGCTTGAATAACTGCTCTTGTATGGCCTTTAGTAACTCTGATATAAGAGGATCATGTAGTGGTTGTGTTTTATGGTTTGGTGATCTTATTGACATGAGACAGTTCGATACTAAACAAACTCGTGAGCAAGATCTATATATTCGTATGGCTAACGCTGAGTCTCAAAGTGGGAGCAAGATGAACATAAGAACTATAGTTGCTATAACTATTCCAACATTATGTGGGGTGCTTTTACTCTCTGTTTATGTTGTCTACAGAATCCGAAGGAACCTTGTTGAGAAGTCAATGGTCAGAGATAACATTGAAAAACATGTAGAGGATCTCCCGTTGTTTGCTCTGCCGACAATTAGTATGGCCACTAGCAACTTCTGGATAGAGAATAAGATTGGACAAGGSGGTTTTGGACCTGTATATAAGGGAAAATTATCAGATGGGCGACAAATTGCTGTAAAGAGACTTTCAAGGAGCTCTGGACAAGGAGTGACCGAGTTCATAAATGAAGTAAAACTMATTGCTAAACTTCAGCATAGAAATCTTGTAAGGCTTCTTGGTTGTTGCATTCAAGGACAAGAGAAGCTACTAATTTATGAATACATGGCTAATGGTAGCTTAGACTCCTTCATTTTTGATCACACCAAAGGAAAATTGCTGAGTTGGCCTCATCGCTTCCACATTATTCTTGGAATTGGTAGGGGGCTTCTATATCTTCATCAAGATTCCCGATTAAGGATAATTCATAGAGATCTCAAAGCAAGTAATGTTTTACTTGATGATAAGTTGAATCCAAAAATATCTGATTTTGGAATGGCTAAAGCTTTTGGAGGAGATCAAACTGAAGGAAACACAAATAGAGTAGTTGGAACTTAG 2037 0.4016 MDILNSMIIVAYLLLVSSVTVSMAVNDSIGVSKSISDDGNGKTIVSKDGVFELGFFSPGSSMKRYLGIWYKKISMYSVVWVANRDKPIDFVSAGILTLDITGNLILTQNDSVVWSTNSQRQAQNPVAQLMDSGNLVVWNHGGPNSQDILWQSFDYPSDTILPGMKVGWDLKRGLEWRITSWKSPNDPAPGDFSWGLVLNEYPDFYMKGRTTLNRFGPWNGIYFSGFRDQNPSSVYEFTYVTSYDAKFPSNKDEIYYTYTLKNTSILSRVHLDQTGGFNFYIWAEEDQQYWELYEMYSSRDQCDDYGVCGSNSKCLIDESPMCQCLEGFSPKSPQEWDMRGWTKGCVRTKPLTCNDISINDIFVKFADLKVPDTTHTWLDENMGLDECRARCLNNCSCMAFSNSDIRGSCSGCVLWFGDLIDMRQFDTKQTREQDLYIRMANAESQSGSKMNIRTIVAITIPTLCGVLLLSVYVVYRIRRNLVEKSMVRDNIEKHVEDLPLFALPTISMATSNFWIENKIGQGGFGPVYKGKLSDGRQIAVKRLSRSSGQGVTEFINEVKLIAKLQHRNLVRLLGCCIQGQEKLLIYEYMANGSLDSFIFDHTKGKLLSWPHRFHIILGIGRGLLYLHQDSRLRIIHRDLKASNVLLDDKLNPKISDFGMAKAFGGDQTEGNTNRVVGT* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2190 678 SMART serkin_6 513 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo02g2190 678 SUPERFAMILY Protein kinase-like (PK-like) 499 678 IPR011009 -
Amo02g2190 678 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 13 678 - -
Amo02g2190 678 Gene3D - 21 153 IPR036426 -
Amo02g2190 678 Pfam D-mannose binding lectin 78 182 IPR001480 -
Amo02g2190 678 ProSiteProfiles Bulb-type lectin domain profile. 29 150 IPR001480 -
Amo02g2190 678 Pfam Protein tyrosine and serine/threonine kinase 515 667 IPR001245 GO:0004672|GO:0006468
Amo02g2190 678 SMART ntp_6 357 439 IPR003609 -
Amo02g2190 678 Gene3D Phosphorylase Kinase; domain 1 487 588 - -
Amo02g2190 678 CDD PAN_AP_plant 350 440 - -
Amo02g2190 678 ProSiteProfiles Protein kinase domain profile. 513 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo02g2190 678 Gene3D Transferase(Phosphotransferase) domain 1 589 678 - -
Amo02g2190 678 PANTHER - 13 678 - -
Amo02g2190 678 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 187 IPR036426 -
Amo02g2190 678 Pfam PAN-like domain 358 422 IPR003609 -
Amo02g2190 678 Pfam S-locus glycoprotein domain 214 332 IPR000858 GO:0048544
Amo02g2190 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Amo02g2190 678 ProSiteProfiles EGF-like domain profile. 298 334 IPR000742 -
Amo02g2190 678 ProSiteProfiles PAN/Apple domain profile. 353 440 IPR003609 -
Amo02g2190 678 SMART blect_4 35 156 IPR001480 -
Amo02g2190 678 CDD B_lectin 39 156 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2190 Amo-Chr2 72083286 72086484 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g2190 455 678 Receptor kinase-like Gene Family AT4G23190 55.310 1.06e-77 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo02g2190 PK_Tyr_Ser-Thr 1.2e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g2190 - - gmx:100812007 836.254