Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2187 ATGGGCATTCCTTCTTTCACAGTGATGCTTGCTTACATGCTTTCTTCTTCTTCTCCTTGCCATGAACTTGATTCTATTCATGTTTCCCAGTCCCTTAGTGATGGCATGACCTTAGTGTCACAAGGTGGAAATTTTTTTAAACTTGGTTTTCTTCGCCCTGGTAATTCTTCACACAAGCGTTACTTGGGAATTTGGTACAAGAAAATTCCAATTCAGACAGTTGTTTGGGTTGCCAATAGGGCCAACCCCATCAATGGTTTCTTAGGAATTTTAACAATGAACATCACAGGCAATCTTTTACTCACAGAAAATGGCACTGAGACTACTTTTTGGAGCACAAGCACAATCTCTCAAAAACAAGCAAAGAATCCGGTATTGAAGCTCTTGGACAGTGGCAATCTTGTGTTAAGAAATGAAGGGGAATCAAATCCAAAGGCCTATTTGTGGCAAAGCTTTGATTATCCAACAGATACATTCTTGCCAACCATGAAGTTGGGAAGGGACCTCCGAAATGGTTTGGATTGGCGCATAACTTGTTGGAAGAGTCCAAATGATCCATCCCCTGGAGACTATTCTCTTGGTTTAGTTGTAAGGGATTATCCAGTCTATTACATGATGAATGGCACACAAAAAGTATATCGGTCTGGACCTTGGAATGGCCTTTACTTCAGTGGATTCCCAGATCTGTCCTTTACATATGTTTTTGAAGACAGTTTTGTCACAAACAAGGATGAGATATCCTATAGTTATAACACCAAGCTTGATTCTATCATTGCAAGAGCTTTAATAAGCCAAACAAGTCAATCTCTTACAAGTTATTTATGGGATGACAATCTTCAGAATTGGAAAGTTTCTGCATCAACACCAGGTGATGTGTGTGATAAATATGACCTTTGTGGAGCCTATGCTTATTGCAGTGTGGCAGAATCACAGCATGTCTGCCAATGCTTTAAAGGGTTCAGTCCAAAGTCACCAGAAGAATGGAACTCAAACAACTCCTCACAAGGATGCATTCGCGATGATCCATTAAGCTGCAATGTTACAAGCACTGATGTGTTTGTCAAATATACTGGCTTGAAAGTGCCAGATACTCAGCATACTAAGCTGCATGAGAATATTAATTTAGATGAATGCAGAAATCTGTGTTTGAAGAACTGCTCTTGTATGGCTTATGCCAATTCAGACATAAGAGGAGGAGGCAGTGGCTGCGCCATGTGGTTTGGCGATCTAATTGACATCAAACTGTTTCAAAACGGTGGACAAGATCTATACATCCGAATGCCTGCTTTTGAGTCAGGACTTCAACATCGGTACAAGCAAAAAGTGATAATTGTTAGCACCATTGCTGCATCTTGTGCAACACTTCTACTTTGTGTTTATAAATATAATAACAAAAAATCAAATATAGAAGAGTATGTAAATGATACGGATCTACCATTATTTGATCTACTAACAATTACTACTGCCACGCACAAGTTCTCGTCGAATAACAAGATTGGACAAGGTGGTTTTGGACCTGTTTATAAGGGAAAATTAGAAGATGGACTTGAAGTTGCTGTGAAGAGACTCTCAAATAGCTCTAGACAAGGAATGACTGAATTCATAACTGAAGTAAAGCTGATTGCAAAACTTCAACACCGTAATCTAGTAAAACTTCTTGCGTTACTTGGGAATTTGGTACAAGAAAATTCCAATTCAGACAGTTGTTTGGGTTGCCAATAG 1722 0.392 MGIPSFTVMLAYMLSSSSPCHELDSIHVSQSLSDGMTLVSQGGNFFKLGFLRPGNSSHKRYLGIWYKKIPIQTVVWVANRANPINGFLGILTMNITGNLLLTENGTETTFWSTSTISQKQAKNPVLKLLDSGNLVLRNEGESNPKAYLWQSFDYPTDTFLPTMKLGRDLRNGLDWRITCWKSPNDPSPGDYSLGLVVRDYPVYYMMNGTQKVYRSGPWNGLYFSGFPDLSFTYVFEDSFVTNKDEISYSYNTKLDSIIARALISQTSQSLTSYLWDDNLQNWKVSASTPGDVCDKYDLCGAYAYCSVAESQHVCQCFKGFSPKSPEEWNSNNSSQGCIRDDPLSCNVTSTDVFVKYTGLKVPDTQHTKLHENINLDECRNLCLKNCSCMAYANSDIRGGGSGCAMWFGDLIDIKLFQNGGQDLYIRMPAFESGLQHRYKQKVIIVSTIAASCATLLLCVYKYNNKKSNIEEYVNDTDLPLFDLLTITTATHKFSSNNKIGQGGFGPVYKGKLEDGLEVAVKRLSNSSRQGMTEFITEVKLIAKLQHRNLVKLLALLGNLVQENSNSDSCLGCQ* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2187 573 CDD PAN_AP_plant 342 428 - -
Amo02g2187 573 Gene3D Hepatocyte Growth Factor 344 424 - -
Amo02g2187 573 Pfam Protein kinase domain 494 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo02g2187 573 SMART blect_4 29 155 IPR001480 -
Amo02g2187 573 Pfam PAN-like domain 345 413 IPR003609 -
Amo02g2187 573 SMART ntp_6 348 427 IPR003609 -
Amo02g2187 573 Pfam S-locus glycoprotein domain 213 324 IPR000858 GO:0048544
Amo02g2187 573 PANTHER - 20 553 - -
Amo02g2187 573 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 220 IPR036426 -
Amo02g2187 573 Gene3D - 21 152 IPR036426 -
Amo02g2187 573 CDD B_lectin 29 155 IPR001480 -
Amo02g2187 573 ProSiteProfiles PAN/Apple domain profile. 345 428 IPR003609 -
Amo02g2187 573 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE 20 553 - -
Amo02g2187 573 SUPERFAMILY Protein kinase-like (PK-like) 467 554 IPR011009 -
Amo02g2187 573 Gene3D Phosphorylase Kinase; domain 1 456 560 - -
Amo02g2187 573 ProSiteProfiles Bulb-type lectin domain profile. 23 149 IPR001480 -
Amo02g2187 573 ProSiteProfiles EGF-like domain profile. 289 326 IPR000742 -
Amo02g2187 573 Pfam D-mannose binding lectin 73 181 IPR001480 -
Amo02g2187 573 ProSiteProfiles Protein kinase domain profile. 493 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2187 Amo-Chr2 72024451 72028970 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g2187 442 555 Receptor kinase-like Gene Family AT4G23190 46.341 7.83e-25 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo02g2187 S_locus_glycop 6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g2187 - - aip:110265385 1045.03