Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2170 AAAAGAAAAGAAAAAAGGAAGAGAAGAGTACGTCAACCCCTATTCACAATCACCAGTTCACCACTCACCAGAGAGAAGAACCATGTGTTCTTGAAGCTTTCTGGTGGAGCTCAAGCTTCAAGCAATGGGCTGTGGGATTTGCAGTTGGAAATGAAGGAGCGGCAACGTTGGAGAGCTGAAGAAGATGCTTTGTTACGAGCTTATGTCAAACAGTATGGTCCAAGGGAATGGAATCTTGTGTCGCAGCGCATGAACACGCCTCTTAACCGGGATGCGAAGTCATGCTTAGAAAGGTGGAAGAATTACCTTAAGCCAGGCATTAAGAAAGGATCTCTCACTGAAGAAGAGCAGCGTCTTGTGATCCGCCTCCAAGCGAAATACGGAAACAAATGGAAGAAAATTGCGGCCGAAGTCCCCGGTCGGACTGCTAAGAGATTAGGCAAGTGGTGGGAAGTGTTCAAAGAGAAACAGCTAAGACAGAAAAAGGAGATTAACAGAATTACCGAACCAATTAACGATAGCAAGTACGAGCACATACTAGAGAGTTTCGCCGAGAAGCTAGTTAAGGACAGCCCTTCGCCTTCGTTTGTTATGGCTTCTTCCAACGGGCCATTTCTTCATGCCGATGCACCGGCCCCTGCATCCCCTGTGCTTCCTTCTTGGCTTTCCAATTCTCATAGTCATAGTGCTACAACCGGCCCTCCGAATTCACCATCCGTGACACTAAGTCTTTCCTCACCAACCGTGGCAGCACCACCATTTCCGTGGATGCAACCGGAGCGAGCACCGGATAATGCTTCTTTTGCTTTAGGCAATGTGCCTCTTTGTGGACCTTTTCCGGCTTCTGGTGATAACATGCTGATATCTGAGTTGGTGGAGTGCTGCAAAGAGCTGGAAGAAACACATCATGCTTTGGCCGCGCATAAGAAAGAGGCAGCCTGGAGGTTAAGAAGGGTGGAGTTGCAGTTGGAGTCGGAGAAGGCAAGTCGAAGGAGGGAGAAGATGGAAGAAATCGAAGCGAAGATTAAAGCCCTCGAGGAAGAGCAGAAGGCTGCTTTGAGTAGAATTGAAGCTGAGTACAGGGAACAGTTAGCCGGATTAAGGAGGGATGCCGAGACCAAGGAGCAGAAGTTGGCCGAACAATGGGCGGCGAAGCACTTGCGGCTTACTCGGTTTCTGGAACAAGCAGGATGCAAACTGGGGCTCCCTGAGCAACATGGAAGATGA 1227 0.4906 KRKEKRKRRVRQPLFTITSSPLTREKNHVFLKLSGGAQASSNGLWDLQLEMKERQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQAKYGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQLRQKKEINRITEPINDSKYEHILESFAEKLVKDSPSPSFVMASSNGPFLHADAPAPASPVLPSWLSNSHSHSATTGPPNSPSVTLSLSSPTVAAPPFPWMQPERAPDNASFALGNVPLCGPFPASGDNMLISELVECCKELEETHHALAAHKKEAAWRLRRVELQLESEKASRRREKMEEIEAKIKALEEEQKAALSRIEAEYREQLAGLRRDAETKEQKLAEQWAAKHLRLTRFLEQAGCKLGLPEQHGR* 409
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2170 408 PANTHER TRANSCRIPTION FACTOR AS1 51 408 IPR031055 GO:0005634|GO:0006351|GO:0010338
Amo02g2170 408 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 158 IPR017930 -
Amo02g2170 408 CDD SANT 113 154 IPR001005 -
Amo02g2170 408 Coils Coil 316 377 - -
Amo02g2170 408 Pfam Myb-like DNA-binding domain 57 117 - -
Amo02g2170 408 SMART sant 53 105 IPR001005 -
Amo02g2170 408 SMART sant 108 156 IPR001005 -
Amo02g2170 408 SUPERFAMILY Homeodomain-like 54 148 IPR009057 -
Amo02g2170 408 Gene3D - 54 108 - -
Amo02g2170 408 ProSiteProfiles Myb-like domain profile. 104 154 IPR001005 -
Amo02g2170 408 ProSiteProfiles Myb-like domain profile. 49 103 IPR001005 -
Amo02g2170 408 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 103 IPR017930 -
Amo02g2170 408 Gene3D - 112 174 - -
Amo02g2170 408 MobiDBLite consensus disorder prediction 225 244 - -
Amo02g2170 408 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 51 408 - -
Amo02g2170 408 CDD SANT 56 103 IPR001005 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Amo02g2170 Amo-Chr2 71483925 71486516 Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g2170 51 403 MYB Transcription Factor Family AT2G37630 65.860 1.19e-157 447
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo02g2170 Myb_DNA-bind_6 7.6e-14 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g2170 K09422 - gmx:100101908 514.227