Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo02g2170 | AAAAGAAAAGAAAAAAGGAAGAGAAGAGTACGTCAACCCCTATTCACAATCACCAGTTCACCACTCACCAGAGAGAAGAACCATGTGTTCTTGAAGCTTTCTGGTGGAGCTCAAGCTTCAAGCAATGGGCTGTGGGATTTGCAGTTGGAAATGAAGGAGCGGCAACGTTGGAGAGCTGAAGAAGATGCTTTGTTACGAGCTTATGTCAAACAGTATGGTCCAAGGGAATGGAATCTTGTGTCGCAGCGCATGAACACGCCTCTTAACCGGGATGCGAAGTCATGCTTAGAAAGGTGGAAGAATTACCTTAAGCCAGGCATTAAGAAAGGATCTCTCACTGAAGAAGAGCAGCGTCTTGTGATCCGCCTCCAAGCGAAATACGGAAACAAATGGAAGAAAATTGCGGCCGAAGTCCCCGGTCGGACTGCTAAGAGATTAGGCAAGTGGTGGGAAGTGTTCAAAGAGAAACAGCTAAGACAGAAAAAGGAGATTAACAGAATTACCGAACCAATTAACGATAGCAAGTACGAGCACATACTAGAGAGTTTCGCCGAGAAGCTAGTTAAGGACAGCCCTTCGCCTTCGTTTGTTATGGCTTCTTCCAACGGGCCATTTCTTCATGCCGATGCACCGGCCCCTGCATCCCCTGTGCTTCCTTCTTGGCTTTCCAATTCTCATAGTCATAGTGCTACAACCGGCCCTCCGAATTCACCATCCGTGACACTAAGTCTTTCCTCACCAACCGTGGCAGCACCACCATTTCCGTGGATGCAACCGGAGCGAGCACCGGATAATGCTTCTTTTGCTTTAGGCAATGTGCCTCTTTGTGGACCTTTTCCGGCTTCTGGTGATAACATGCTGATATCTGAGTTGGTGGAGTGCTGCAAAGAGCTGGAAGAAACACATCATGCTTTGGCCGCGCATAAGAAAGAGGCAGCCTGGAGGTTAAGAAGGGTGGAGTTGCAGTTGGAGTCGGAGAAGGCAAGTCGAAGGAGGGAGAAGATGGAAGAAATCGAAGCGAAGATTAAAGCCCTCGAGGAAGAGCAGAAGGCTGCTTTGAGTAGAATTGAAGCTGAGTACAGGGAACAGTTAGCCGGATTAAGGAGGGATGCCGAGACCAAGGAGCAGAAGTTGGCCGAACAATGGGCGGCGAAGCACTTGCGGCTTACTCGGTTTCTGGAACAAGCAGGATGCAAACTGGGGCTCCCTGAGCAACATGGAAGATGA | 1227 | 0.4906 | KRKEKRKRRVRQPLFTITSSPLTREKNHVFLKLSGGAQASSNGLWDLQLEMKERQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQAKYGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQLRQKKEINRITEPINDSKYEHILESFAEKLVKDSPSPSFVMASSNGPFLHADAPAPASPVLPSWLSNSHSHSATTGPPNSPSVTLSLSSPTVAAPPFPWMQPERAPDNASFALGNVPLCGPFPASGDNMLISELVECCKELEETHHALAAHKKEAAWRLRRVELQLESEKASRRREKMEEIEAKIKALEEEQKAALSRIEAEYREQLAGLRRDAETKEQKLAEQWAAKHLRLTRFLEQAGCKLGLPEQHGR* | 409 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo02g2170 | 408 | PANTHER | TRANSCRIPTION FACTOR AS1 | 51 | 408 | IPR031055 | GO:0005634|GO:0006351|GO:0010338 | |
Amo02g2170 | 408 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 104 | 158 | IPR017930 | - | |
Amo02g2170 | 408 | CDD | SANT | 113 | 154 | IPR001005 | - | |
Amo02g2170 | 408 | Coils | Coil | 316 | 377 | - | - | |
Amo02g2170 | 408 | Pfam | Myb-like DNA-binding domain | 57 | 117 | - | - | |
Amo02g2170 | 408 | SMART | sant | 53 | 105 | IPR001005 | - | |
Amo02g2170 | 408 | SMART | sant | 108 | 156 | IPR001005 | - | |
Amo02g2170 | 408 | SUPERFAMILY | Homeodomain-like | 54 | 148 | IPR009057 | - | |
Amo02g2170 | 408 | Gene3D | - | 54 | 108 | - | - | |
Amo02g2170 | 408 | ProSiteProfiles | Myb-like domain profile. | 104 | 154 | IPR001005 | - | |
Amo02g2170 | 408 | ProSiteProfiles | Myb-like domain profile. | 49 | 103 | IPR001005 | - | |
Amo02g2170 | 408 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 49 | 103 | IPR017930 | - | |
Amo02g2170 | 408 | Gene3D | - | 112 | 174 | - | - | |
Amo02g2170 | 408 | MobiDBLite | consensus disorder prediction | 225 | 244 | - | - | |
Amo02g2170 | 408 | PANTHER | PROTEIN ROUGH SHEATH 2 HOMOLOG | 51 | 408 | - | - | |
Amo02g2170 | 408 | CDD | SANT | 56 | 103 | IPR001005 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo02g2170 | Amo-Chr2 | 71483925 | 71486516 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo02g2170 | 51 | 403 | MYB Transcription Factor Family | AT2G37630 | 65.860 | 1.19e-157 | 447 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB | Amo02g2170 | Myb_DNA-bind_6 | 7.6e-14 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo02g2170 | K09422 | - | gmx:100101908 | 514.227 |