Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2165 ATGAAGGAGCGGCAACGTTGGAGAGCTGAAGAAGATGCTTTGTTACGAGCTTATGTCAAACAGTATGGTCCAAGGGAATGGAATCTTGTGTCGCAGCGCATGAACACGCCTCTTAACCGGGATGCGAAGTCATGCTTAGAAAGGTGGAAGAATTACCTTAAGCCAGGCATTAAGAAAGGATCTCTCACCGAAGAAGAGCAGCGTCTTGTGATCCGCCTCCAAGCGAAATACGGAAACAAATGGAAGAAAATTGCGGCCGAAGTCCCCGGTCGGACTGCTAAGAGATTAGGCAAGTGGTGGGAAGTGTTCAAAGAGAAACAGCTAAGACAGAAAAAGGAGATTAACAGAATTACCGAACCAATTAACGATAGCAAGTACGAGCACATACTAGAGAGTTTCGCCGAGAAGCTAGTTAAGGACAGCCCTTCGCCTTCGTTTGTTATGGCTTCTTCCAACGGGCCATTTCTTCATGCGGATGCACCGGCCCCTGCATCCCCTGTGCTTCCTTCTTGGCTTTCCAATTCTCATAGTCATAGTGCTACAACCGGCCCTCCAAATTCACCATCCGTGACACTAAGTCTTTCCTCACCAACCGTGGCAACACCACCATTTCCGTGGATGCAACCGGAGAGAGCACCGGATAATGCTTCGTTTGCTTTAGGCAATGTGCCTCTTTGTGGACCTTTTCCGGCTTCTGGTGATAACATGCTGATATCTGAGTTGGTGGAGTGCTGCAAAGAGCTGGAAGAAACACATCATGCTTTGGCCGCGCATAAGAAAGAGGCAGCCTGGAGGTTAAGAAGGGTGGAGTTGCAGTTGGAGTCGGAGAAGGCAAGCCGAAGGAGGGAGAAGATGGAAGAAATCGAAGCGAAGATTAAAGCCCTCGAGGAAGAGCAGAAGGCTGCTTTGAGTAGAATTGAAGCTGAGTACAGGGAACAGTTAGCCGGATTAAGGAGGGATGCCGAGACCAAGGAGCAGAAGTTGGCCGAACAATGGGCGGCGAAGCACTTGCGGCTTACTCGGTTTCTGGAACAAGCAGGATGCAAACTGGGGCTCCCTGAGCAACATGGAAGATGA 1077 0.4977 MKERQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQAKYGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQLRQKKEINRITEPINDSKYEHILESFAEKLVKDSPSPSFVMASSNGPFLHADAPAPASPVLPSWLSNSHSHSATTGPPNSPSVTLSLSSPTVATPPFPWMQPERAPDNASFALGNVPLCGPFPASGDNMLISELVECCKELEETHHALAAHKKEAAWRLRRVELQLESEKASRRREKMEEIEAKIKALEEEQKAALSRIEAEYREQLAGLRRDAETKEQKLAEQWAAKHLRLTRFLEQAGCKLGLPEQHGR* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2165 358 MobiDBLite consensus disorder prediction 175 195 - -
Amo02g2165 358 Pfam Myb-like DNA-binding domain 7 67 - -
Amo02g2165 358 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 358 - -
Amo02g2165 358 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Amo02g2165 358 Gene3D - 62 125 - -
Amo02g2165 358 PANTHER TRANSCRIPTION FACTOR AS1 1 358 IPR031055 GO:0005634|GO:0006351|GO:0010338
Amo02g2165 358 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Amo02g2165 358 CDD SANT 6 53 IPR001005 -
Amo02g2165 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Amo02g2165 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Amo02g2165 358 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Amo02g2165 358 CDD SANT 63 104 IPR001005 -
Amo02g2165 358 Coils Coil 266 327 - -
Amo02g2165 358 SMART sant 3 55 IPR001005 -
Amo02g2165 358 SMART sant 58 106 IPR001005 -
Amo02g2165 358 Gene3D - 4 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2165 Amo-Chr2 71231699 71234224 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g2165 1 353 MYB Transcription Factor Family AT2G37630 65.860 3.77e-158 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo02g2165 Myb_DNA-bind_6 6.2e-14 CL0123