Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2162 GCTGAGTTTTTCCCTGATAGATCAGAAGTTCAATGTCTGCACAGATGGCAAAAAGTTCTTAATCCAGAACTTGTTAAAGGACCTTGGACTAAGGAGGAGGATGACAAAATAGTTGAAATGGTGTCAAAATATGGGCCATCGAAATGGTCTTTGATAGCAAAGTCCTTGCCTGGTCGAATAGGAAAACAGTGTCGAGAACGGTGGCACAATCATCTTAATCCCGACATAAAGAAGGATGCTTGGTCTTCGGAAGAGGAGTTGGCCCTCATGAATGCTCATCGCATATATGGAAACAAATGGGCTGAAATTGCTAAGGTTCTTCCTGGAAGGACTGATAATGCTATAAAGAACCACTGGAATAGTTCGCTAAAAAAGAAGATGGATTTCTATTTAGCCACGGGAAGACTTCCACCAACTTTGAAGAACAGTCCACAAGTTGTTGTTAAAGACACTGTTAGACATTCTAAACCTACATTATTTGTTTGTTCAAATAAAGAATCAGATACTGCAGTTGAATCTTCATCGGAAACTACAGAAATTACTCAACTATATAGCAGTGACAAGAAGGACAAGAATCGACTAGAGTGCTTTGTAGCAGTTGGAGATTCCTCTGGTGCTCCTCTTGTAAATGAATCTGTTGATACTGAATGCAAAGCTGGATCATCCAACATAAATATCAGCTGCAACAAATCAGAACTGGTGTCAAGAGATAATTTCCAAGTACATAGTGCGAAGAACTCCGAGAATCCTGGACTGAGTGGCAAACCGAGTGAGAGTTGCAGAGACAATGCTAAAATGAGCAATAACAGGTTCTGCAGAACATGTTTTTCACACGAAACTCCGGTCTCTGGTTCTTTATGCTACGAGCCACCACAGTTAGACTTTTCAGTCCCTTTAGATTCTCTTTATTCCAATATCCTTCATGAGCAGAATGACTGCTCTTCTCCGATTGCGTCATCCGTTGGTTTCTTCTCTCCACTTGGTGTAAATGGTAGTGAAAACGTAACCCCCGAATCAATATTGAAAATGGCAGCAAAAACTTTTCCGAGTACTCCTTCAATAATGAGGAAGAGAAGGACTGTTTCCCAAGCACATGTCACTCCTAGTAAAGCTTTGAAAGCAGATATTGATTCACAGACGTCTAAAGTACAAGAGAGATCCAAGGATAACTCTGATTCTATAGTTGGGAGCGACATTATTAATAATAATAAGGATTTCAATGCATCTCCCCCCTATCGACTTAGACCAAAGCGGACCGCAGTTGTCAAGTCGATTGAGAAACAGCTTGAGTTTGCATTTGAAAAGGAGAAGGATGACAGTGGTATGCATAAAGTACAAGAAGGGATTTTGATTGGACTTGCTCTTGAAGCTGATTGA 1377 0.406 AEFFPDRSEVQCLHRWQKVLNPELVKGPWTKEEDDKIVEMVSKYGPSKWSLIAKSLPGRIGKQCRERWHNHLNPDIKKDAWSSEEELALMNAHRIYGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKMDFYLATGRLPPTLKNSPQVVVKDTVRHSKPTLFVCSNKESDTAVESSSETTEITQLYSSDKKDKNRLECFVAVGDSSGAPLVNESVDTECKAGSSNINISCNKSELVSRDNFQVHSAKNSENPGLSGKPSESCRDNAKMSNNRFCRTCFSHETPVSGSLCYEPPQLDFSVPLDSLYSNILHEQNDCSSPIASSVGFFSPLGVNGSENVTPESILKMAAKTFPSTPSIMRKRRTVSQAHVTPSKALKADIDSQTSKVQERSKDNSDSIVGSDIINNNKDFNASPPYRLRPKRTAVVKSIEKQLEFAFEKEKDDSGMHKVQEGILIGLALEAD* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2162 458 Pfam Myb-like DNA-binding domain 29 87 - -
Amo02g2162 458 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Amo02g2162 458 SUPERFAMILY Homeodomain-like 23 119 IPR009057 -
Amo02g2162 458 CDD SANT 80 123 IPR001005 -
Amo02g2162 458 SMART sant 77 125 IPR001005 -
Amo02g2162 458 SMART sant 25 74 IPR001005 -
Amo02g2162 458 MobiDBLite consensus disorder prediction 371 398 - -
Amo02g2162 458 PANTHER MYB PROTEIN-RELATED 1 388 - -
Amo02g2162 458 PANTHER MYB-RELATED PROTEIN B-LIKE 1 388 - -
Amo02g2162 458 ProSiteProfiles Myb-like domain profile. 21 72 IPR001005 -
Amo02g2162 458 CDD SANT 28 72 IPR001005 -
Amo02g2162 458 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 76 IPR017930 -
Amo02g2162 458 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 127 IPR017930 -
Amo02g2162 458 Gene3D - 25 77 - -
Amo02g2162 458 Gene3D - 79 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2162 Amo-Chr2 71157186 71160623 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g2162 1 437 MYB Transcription Factor Family AT5G02320 47.357 1.24e-116 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo02g2162 Myb_DNA-bind_6 5.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g2162 K09422 - gmx:100793280 555.829