Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2130 ATGGTTTTCACTTCAATTCCAGCAGCTTATCTTGAAGCAGCAGCCAACTGGCAGCAGCATCAACAGCAACAACAAAATCATCAACCTAGTGGCAACTCTGGTGGTTCTACATCTCCTCAGCTTCTTCCACCGCCACCTCCTCCGCCACCACAACCTCAACCTCATGGAGCAGGAGGAGGAGCCGGCTCCATCAGGCCAGGCTCGATGGCGGATAGGGCAAGGATGGCGAACCTCCCCATGCCCGAGGCTTCACTAAGGTGTCCAAGATGCGAATCAACCAACACAAAGTTTTGCTACTTCAACAATTATAGCCTCTCTCAGCCCCGCCATTTCTGCAAGACCTGTAGAAGGTACTGGACAAGAGGCGGGGCCTTGAGAAACGTCCCCGTCGGCGGAGGATGCAGAAGAAACAAAAGAAGCAAAGGAGGCGGCGGAGGAACTTCCAGATCCCCCGCCGCAAGCTCGGACCGCCAGACGGGGAGTGCCAGCTCAACAAACTCCGTTTCCTCAAACTCAACCGGTGACATAGTGGGCCTCGGCCCATCTATGCCACCATTAAGATTTATGGCTCCATTGCATCATCATCAACTCACAGATTTTGCAACCGGTTCTGGTACAGACATACCCCTAAACTATAACCTAATGAACTATACCTCGATTTCCGGATCAATGGGAGCCGTAGGTTTAGGTGACTTGAGTTTCCAAATAGGAAACCCTTTAGCTGCCGCCTCCGGTGGCAGCGGAGGAGGAGCAAGTGGTGGCTCTTCTCTCTTATCTGGATTAGAACAATGGAGGATTCCACAACAGTTTCCATTCATGGCTGGTTTGGAAGGTTCTTCACATGGTGGTGGTAACAATAATGGTGGTGGATTATTATACCCTTTTGAAGGAAGTGCTGAGATAAGTGGTTATGTGAGGCCAAAGGTTTCAACTTCTATGGTGTTAACACAATTGGCTTCGGTGAAAATGGAAGATTCTAGAGAACTTAATAATGTTTCTTCTGGACAGTTCTTGATGGGAAGCATTGGCAACAATAACAACAACACCACCACCAGCAACAACAATGTTCCAACACATGAACAATATTGGAATGGTGCTACTGGAACTTCTGCTTCAGCTTCTTGGACTGAACTTTCTGGTTTTAGTTCTTCTTCCACTACAAGCAATAACCAACTATAG 1179 0.4843 MVFTSIPAAYLEAAANWQQHQQQQQNHQPSGNSGGSTSPQLLPPPPPPPPQPQPHGAGGGAGSIRPGSMADRARMANLPMPEASLRCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGGGGGTSRSPAASSDRQTGSASSTNSVSSNSTGDIVGLGPSMPPLRFMAPLHHHQLTDFATGSGTDIPLNYNLMNYTSISGSMGAVGLGDLSFQIGNPLAAASGGSGGGASGGSSLLSGLEQWRIPQQFPFMAGLEGSSHGGGNNNGGGLLYPFEGSAEISGYVRPKVSTSMVLTQLASVKMEDSRELNNVSSGQFLMGSIGNNNNNTTTSNNNVPTHEQYWNGATGTSASASWTELSGFSSSSTTSNNQL* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2130 392 MobiDBLite consensus disorder prediction 342 367 - -
Amo02g2130 392 Pfam Dof domain, zinc finger 84 139 IPR003851 GO:0003677|GO:0006355
Amo02g2130 392 MobiDBLite consensus disorder prediction 16 38 - -
Amo02g2130 392 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 20 387 IPR045174 GO:0003700|GO:0006355
Amo02g2130 392 MobiDBLite consensus disorder prediction 143 176 - -
Amo02g2130 392 ProSitePatterns Zinc finger Dof-type signature. 87 123 IPR003851 GO:0003677|GO:0006355
Amo02g2130 392 MobiDBLite consensus disorder prediction 39 55 - -
Amo02g2130 392 MobiDBLite consensus disorder prediction 126 176 - -
Amo02g2130 392 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 20 387 - -
Amo02g2130 392 ProSiteProfiles Zinc finger Dof-type profile. 85 139 IPR003851 GO:0003677|GO:0006355
Amo02g2130 392 MobiDBLite consensus disorder prediction 16 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2130 Amo-Chr2 70126847 70128602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g2130 1 325 C2C2-Dof Transcription Factor Family AT2G37590 42.773 9.17e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo02g2130 zf-Dof 6.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g2130 - - aip:107628427 596.66