Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2117 ATGTCTGGGCGGCGGCAAAGAAGTTCCGGAGGCTCAGAGTTCACAGAGAATGAGATCAATGTTCTTGCTTCAAGGTTACAAGCATTGCTCCCACAACCTAGCCAACAAACAAGGAACTCAAGGCAGGTATCAGTGTTGGAGATCTTGAAGGAAACTTGCAGTCACATCAAGCGGCTACAGAAAGATGTGGAAGACCTTAGTGAAACGCTGACAGGGCTGTTGGATTCTCTTCACATTACTGATATTGACATCACTCTTTTACAAGATCTTTTGCAACAAAAATAA 285 0.4386 MSGRRQRSSGGSEFTENEINVLASRLQALLPQPSQQTRNSRQVSVLEILKETCSHIKRLQKDVEDLSETLTGLLDSLHITDIDITLLQDLLQQK* 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2117 94 PANTHER DNA BINDING PROTEIN 1 93 IPR044172 -
Amo02g2117 94 PANTHER DNA BINDING PROTEIN 1 93 - -
Amo02g2117 94 Pfam Helix-loop-helix DNA-binding domain 18 60 IPR011598 GO:0046983
Amo02g2117 94 Gene3D - 4 71 IPR036638 GO:0046983
Amo02g2117 94 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 3 59 IPR011598 GO:0046983
Amo02g2117 94 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 17 63 IPR036638 GO:0046983
Amo02g2117 94 Coils Coil 49 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2117 Amo-Chr2 69832787 69833991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g2117 1 76 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 46.154 1.22e-13 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo02g2117 HLH 0.00016 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g2117 - - adu:110277334 134.806