Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2100 ATGAACATTGGTTTGACATTATTTAAGAGAAGGTGCAAAGAACTCAGCATCAATCATTGGCCTCATAGAAAAATCAAAAGGATATCTGGAGGGGGGAAGGGCGTCGCTACCACGCCTCGCTGCCGCACCACCACGCCTCACCGTCAAACCCATCCCACTGTTGCCACCAACGTCGACGAAAAACGATGGCTCGTGAGTGAGAAGGTTGCGGGCTTGGAGCCAACGTCATGGAGAAGAGGCATCGGAGAGAGGCAGAACTCGCATCTCGTTGCCGCCGTCCATGGAGCCTCGAGCTGCATCACTGTCACCAGAAGGAGGGAGAAAATGCTAGCTGGAGGAGCTGCGAGAGAGGAGACGCACAAGGAGGAGCCCGACGTGCGTGAAGAAGAAGGGGAAAGGTCTGAGGCTGACATGGTTTCCGCCACTGCCGTCTACCTCCGTCACTGCCGAACTGCTCCTCTGCGGTGCTTAGTTGGAGCTTCTGTTACTGTTGCTGGGGATCTATGGTTGCTGGAAAACACCGCTATTGTTGCTACCGAAGGAGGAAGAAGCATTGCCGCTGTTCTGACCGCCAGGCACAGTCTTGTAGTCACTAGAACCACTGCCGGGGATGCCACTACTTGGCTCATTAGGGTGTTACATTGCTGCAGCCGCCGGCTGGGTCGCGTGGAGGGAGGAAGAGCTGCTGGGTGTTGCCGCACCTTGTCTCCGCCGCCTCTGTCGCTGAAAATAGCCACTGAGTCCTCTGTATTAGTAAGGTTGTTATTCATGCTTGCATTCCGTGCTCGGAGTTTGCAGCTGCCTCGTTTTTTCATTTCAGTAGCTATTTATGCTGCTGCAAAAGTGTGTGGGGCTATGTTTTGA 864 0.5405 MNIGLTLFKRRCKELSINHWPHRKIKRISGGGKGVATTPRCRTTTPHRQTHPTVATNVDEKRWLVSEKVAGLEPTSWRRGIGERQNSHLVAAVHGASSCITVTRRREKMLAGGAAREETHKEEPDVREEEGERSEADMVSATAVYLRHCRTAPLRCLVGASVTVAGDLWLLENTAIVATEGGRSIAAVLTARHSLVVTRTTAGDATTWLIRVLHCCSRRLGRVEGGRAAGCCRTLSPPPLSLKIATESSVLVRLLFMLAFRARSLQLPRFFISVAIYAAAKVCGAMF* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2100 287 ProSiteProfiles RWP-RK domain profile. 1 50 IPR003035 -
Amo02g2100 287 Pfam RWP-RK domain 1 27 IPR003035 -
Amo02g2100 287 MobiDBLite consensus disorder prediction 38 52 - -
Amo02g2100 287 MobiDBLite consensus disorder prediction 27 52 - -
Amo02g2100 287 MobiDBLite consensus disorder prediction 110 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2100 Amo-Chr2 68943752 68950553 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g2100 1 48 AtRKD Transcription Factor Family AT5G53040 39.216 1.05e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Amo02g2100 RWP-RK 3.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g2100 - K07165 aip:110270716 132.88