Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2026 ATGAGTTCTCCAGGATCATCCTCAACCTCAAGAGTTTCAGTAGAAGAGCAAGCCCCATTGCCAAAGCCGGCTGATCCTGCAGCAAAATTATCAAGCGATGAGATTGCACCACTTTCAGGAAATCCATTCTTTCATGTAGTTCTTTCAAAATCACATGTTCGTCGTAGTTGTCTCATGGGGCCATCAAAGGACTTAGTAGATATACTTCCATTTGCTGAGGTCCCTACTGTTCTTAAGTGTGGAGGTGAGAGCTGGGACATGGTGTATCGTGGACATGCTCCGGGTCGCAAGTTCTTCGATGGAGGCTGGAGAAAATTTGTCAAAGCTAATTGTTTGGTAGAGGGAGATGCTTGTGTTTTCGAGCTCATGGCAAACAGTGATGAGAAAATTGTCTTTGAAGTTCAAATTCTCAGAGGTGATGTCCCCAAAGTGTTTTTTAAAAGGGATAGAATTGGTGAAAGTGAACAGAAGCCAATTGTCATTGACTAG 489 0.4335 MSSPGSSSTSRVSVEEQAPLPKPADPAAKLSSDEIAPLSGNPFFHVVLSKSHVRRSCLMGPSKDLVDILPFAEVPTVLKCGGESWDMVYRGHAPGRKFFDGGWRKFVKANCLVEGDACVFELMANSDEKIVFEVQILRGDVPKVFFKRDRIGESEQKPIVID* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2026 162 Pfam B3 DNA binding domain 44 133 IPR003340 GO:0003677
Amo02g2026 162 CDD B3_DNA 42 138 IPR003340 GO:0003677
Amo02g2026 162 MobiDBLite consensus disorder prediction 1 15 - -
Amo02g2026 162 SMART B3_2 44 140 IPR003340 GO:0003677
Amo02g2026 162 Gene3D - 27 140 IPR015300 -
Amo02g2026 162 SUPERFAMILY DNA-binding pseudobarrel domain 39 138 IPR015300 -
Amo02g2026 162 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 13 147 IPR044837 -
Amo02g2026 162 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS04G0386900 13 147 - -
Amo02g2026 162 ProSiteProfiles B3 DNA-binding domain profile. 43 140 IPR003340 GO:0003677
Amo02g2026 162 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2026 Amo-Chr2 66583548 66587112 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g2026 41 138 REM Transcription Factor Family AT1G49480 38.095 9.55e-11 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo02g2026 B3 1.6e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g2026 - - adu:107474771 311.997