Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2004 ATGAATCGCTTTTTCATCTCCGTTCATTTTTTCTTCGTTGTCTTCTCGGCAACTCTGATTTCTCAGAATTCAGCATTCACTGATCCTCTTGATGTCTCCGCTCTCCAGGATCTATACAGAACCTTAAACACCCCGCCGTTGCTGGAAAGATGGAATGGCGATGATCCCTGTCAGGAGTCTTGGACAGGAGTAGCATGCTCTGGCTCATCAGTTATACACCTAAAAATTCAAGGATTAAACCTCACTGGATATCTTGGAGGCCTTCTCCACAATCTACAGAACTTGAAGCACCTTGATGTCAGTTCTAACAACATAGTGGGAGAAATACCATCTGGTTTACCCCCAAATGTCACACACATAAATATGGCTTACAACTATCTGAGCCAAAGTATCCCACCATTATCAGCCATGAAAAAACTAAAACATCTGAATTTAAGCCACAATTTCTTGTATGGACCCATTGGCAATGTGTTTGCTGGGTTAGATGAACTCAAAGAAATGGACCTTTCCTACAACAATTTCACTGGAGATTTGCCGAGTTCATTTGGCTCCTTGAAAAACCTTGGGAAATTGTTCCTTGAGAACAACAAATTCACTGGGTCAGTCACGTACCTGGCTGCGCTTCCTCTCACCGATTTGAACATCCAGGATAATCTGTTTAGTGGGATTCTTCCACCACATTTTCAGTCCATACAAAACTTATGGATTGGAGGGAATAAATTCCAAGCAGTGGACGACTCTCCTCCCTGGCCTTTTCCTTTGGACAGTGTACCAGTTGAGCATAATAGTACTCGTCCACCCATAACGCAAACGAATGCCATTGAGAACTATGCTTCTGCTAAAGCAATCAAGCACAAGAAGAAACACATGGGCCCTGGAGGAATAGCTTTTACAGTTGGTGGAGTAACATTATTGGTAGCTGGATTGACACTCTTCATTGCAACTCGTTTGAATAGATTACATTCTGAGAGACTGAAGAACTTGGAAAGTGTTGAAAGATCATTCCCTTCTCTTCCAATCAGTGACTCAAAAGATATCTCTACTACTGCCGTAGATGAGAGCCTGCAAATCCCACCTTTCAATTCTGCATCCCTTTTGGTTCCAAGGCGACTACCTTCCCAAAATCATAAAAAAAATGGAGAAACAAGGAGGAGTTTTTCTGAAAGAGAAAAGGTCACTGGGAGGACAAAAGTTTATACAGTAGCAGAGATTCAGTTGATTACAAACAGCTTCAGTGAAGACAACCTTCTTGGAGAGGGATCTCTTGGTCCTGTTTATAGAGCTGAATTTCCAGATGGAAAGGTTTTRGCTGTGAAGACTATCACCATGGCGGGCTTGTCTTTCAGTGAAGAGGAGAAGTTCTTAGATGCAGTTTGCACCGCTTCCCGTTTAAAACATCCTAACATTGTTGCACTCAAAGGTTACTGTTTGGAGCATGGRCAGCATCTCCTTGTCTACGAGTATGTCAGAAATTTAACTCTAGATGATGCTCTTCACAGTGATGCATACAAGCCTTTGTCATTGACCATCCGTCTCCAGATTGCTCTTGGTGTTGCTCAGGCTCTGGCCTATATGCACTCCAGTTCCCCTCCTGTAGCCCACGGCAACTTGAAGTCTTCCAATATTCTGCTAGATGAAAATCTAATGCCTCGTGTTTGTGACTGCGGCTTGACTATTTTGAGACCACTGACAAGCAACAAGGTCAAAACTCGAGCTTTGGAGATTTCTATCAGAGATGCAGGCTACATTTCACCAAACCATGGTCAACCAGGAACTAACAGCTGCATAGAAAGTGACGTCTTTGCATATGGGGTGTTGCTTTTGGAACTATTAACCGGAAGGGAACCTTTCGATGGTTCCAGGCGGAAGGAAGAGCAATATCTAGCTCAATGGGCTTCATCCAGGCTTCATGATAGCGAGACCTTGGAACAGATGGTGGATCCTGCAATTCAAAAGACATTTTCATCCAAGGCTCTTTCTCGTTATGCTGATATACTCTCCCTCTGCCTACAGCCTGTAAAGGAATTTCGGCCACCAATGTCTGAAATAGCAGAATCACTTGCTTCTTTCATGCAACGGCTCAACGCGTCAAAGAGCGGCGCAGCAGATAGGAATGGACCAGTGTCTGATCCGCTCGAGAGGTCTTTCCGGACAACTGCATCTCATTTTATTGCTTCACCCACATTGAGCTACGTGTCCGCCTGA 2205 0.439 MNRFFISVHFFFVVFSATLISQNSAFTDPLDVSALQDLYRTLNTPPLLERWNGDDPCQESWTGVACSGSSVIHLKIQGLNLTGYLGGLLHNLQNLKHLDVSSNNIVGEIPSGLPPNVTHINMAYNYLSQSIPPLSAMKKLKHLNLSHNFLYGPIGNVFAGLDELKEMDLSYNNFTGDLPSSFGSLKNLGKLFLENNKFTGSVTYLAALPLTDLNIQDNLFSGILPPHFQSIQNLWIGGNKFQAVDDSPPWPFPLDSVPVEHNSTRPPITQTNAIENYASAKAIKHKKKHMGPGGIAFTVGGVTLLVAGLTLFIATRLNRLHSERLKNLESVERSFPSLPISDSKDISTTAVDESLQIPPFNSASLLVPRRLPSQNHKKNGETRRSFSEREKVTGRTKVYTVAEIQLITNSFSEDNLLGEGSLGPVYRAEFPDGKVLAVKTITMAGLSFSEEEKFLDAVCTASRLKHPNIVALKGYCLEHGQHLLVYEYVRNLTLDDALHSDAYKPLSLTIRLQIALGVAQALAYMHSSSPPVAHGNLKSSNILLDENLMPRVCDCGLTILRPLTSNKVKTRALEISIRDAGYISPNHGQPGTNSCIESDVFAYGVLLLELLTGREPFDGSRRKEEQYLAQWASSRLHDSETLEQMVDPAIQKTFSSKALSRYADILSLCLQPVKEFRPPMSEIAESLASFMQRLNASKSGAADRNGPVSDPLERSFRTTASHFIASPTLSYVSA* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2004 734 Pfam Protein tyrosine and serine/threonine kinase 415 687 IPR001245 GO:0004672|GO:0006468
Amo02g2004 734 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Amo02g2004 734 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 2 ISOFORM X1 10 706 - -
Amo02g2004 734 Gene3D Transferase(Phosphotransferase) domain 1 490 708 - -
Amo02g2004 734 Gene3D Phosphorylase Kinase; domain 1 372 488 - -
Amo02g2004 734 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 10 706 - -
Amo02g2004 734 SUPERFAMILY L domain-like 31 248 - -
Amo02g2004 734 Pfam Leucine rich repeat 139 198 IPR001611 GO:0005515
Amo02g2004 734 Pfam Leucine Rich Repeat 94 113 IPR001611 GO:0005515
Amo02g2004 734 SUPERFAMILY Protein kinase-like (PK-like) 388 687 IPR011009 -
Amo02g2004 734 Gene3D Ribonuclease Inhibitor 29 287 IPR032675 -
Amo02g2004 734 ProSiteProfiles Protein kinase domain profile. 411 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2004 Amo-Chr2 65874664 65879575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g2004 27 734 Strubbelig Receptor Gene Family AT5G06820 53.825 0.0 699
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Amo02g2004 PK_Tyr_Ser-Thr 1.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g2004 - - cam:101498175 1073.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0383 12 6326248 6329056 Amo02g2004 02 65874664 65879575 hybridization
Amo16g0141 16 1886871 1893705 Amo02g2004 02 65874664 65879575 PCT
Amo02g2004 02 65874664 65879575 Amo16g0141 16 1886871 1893705 PCT