Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1999 ATGCTATTGCTTTTACTGGTTTGTTCCAAACTGAAGTATACTCGTCGCCTGTCATCGTTTCTCTTCCCCTCGCCGTCGTCTATCTGTGTCGCGGTTGAGCTCGACGGTCTCAACGACCCTTCCTCCGTGAGTGGCAAGTTCATGCGGAGGTTCAGGCTCCCTGAGAACGCCAAGATGAATCAGGTGAAGACATCCATGGAGAATGGTGTTCTTACTGTCACTGTTCCCAAGGCAGAAAATGAGACAAAAATAAACATCAACCCTAATTGGAGAAACATTCTGCCTGTTTGTTCCCTTTTGTATCCAGGTCAGCAGACAGTAGTTTCAGTTTCTGATTCAGACGCTGTTGGAATTATTGCATCCATGTCTAACATCAGCAACAATGTGGCTGGGGTTGACAACACCTTCAGAAGAAAATTCGATCGAGAAGAGTATTTGGAACGAGCTCGGGAGCGTGAGAGGCAGGAGGAGGAGGGTCGATCTAAATCTAAAGCTAAAGGTCCTCCAGTGCAGAGGAAACCCCTAAAACATAGAGATTATGAAGTGGACCTCGAGTCCCGCCTAGGCAAGACTCAAGTTGTTACGCCGGTTGCACCACTGAGTCAGCAGGCTGGATATTACTGCTCTGTTTGTGAGTGTGTGGTAAAGGACTCAGCGAACTACTTGGATCATATTAATGGAAAGAAACATCAAAGAGCTTTGGGCATGTCTATGCGAGTTGAACGAGCCTCTCTCCAACAGGTTCAGGAACGATTTGAGGTTCTTAAGAAACGTAAAGATCTTGGCACATTCACCGAGCAAGATCTTGACGAAAGGGTTCTAAAACAGCAGCTAGAAGAGGAAGAAAGAAAACGATTGCGTCGTGAAAAGAAGAAGGAAAAGAAAGAGAAGGCAATGGAAGAACCGGAAATTGATCCTGATGTTGCGGCCATGATGGGGTTTGGTGGTTTCCGGTCATCAAAGAAATGA 969 0.4623 MLLLLLVCSKLKYTRRLSSFLFPSPSSICVAVELDGLNDPSSVSGKFMRRFRLPENAKMNQVKTSMENGVLTVTVPKAENETKININPNWRNILPVCSLLYPGQQTVVSVSDSDAVGIIASMSNISNNVAGVDNTFRRKFDREEYLERARERERQEEEGRSKSKAKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLQQVQERFEVLKKRKDLGTFTEQDLDERVLKQQLEEEERKRLRREKKKEKKEKAMEEPEIDPDVAAMMGFGGFRSSKK* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1999 322 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 128 322 IPR040107 GO:0000398|GO:0005681
Amo02g1999 322 SMART ZnF_U1_5 203 237 IPR003604 GO:0003676|GO:0008270
Amo02g1999 322 Pfam Hsp20/alpha crystallin family 43 83 IPR002068 -
Amo02g1999 322 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 1 92 IPR002068 -
Amo02g1999 322 Coils Coil 271 301 - -
Amo02g1999 322 MobiDBLite consensus disorder prediction 148 177 - -
Amo02g1999 322 MobiDBLite consensus disorder prediction 280 322 - -
Amo02g1999 322 Gene3D - 28 92 IPR008978 -
Amo02g1999 322 MobiDBLite consensus disorder prediction 148 165 - -
Amo02g1999 322 Pfam Zinc-finger of C2H2 type 206 230 - -
Amo02g1999 322 SUPERFAMILY beta-beta-alpha zinc fingers 202 243 IPR036236 -
Amo02g1999 322 Gene3D Classic Zinc Finger 201 238 - -
Amo02g1999 322 MobiDBLite consensus disorder prediction 280 304 - -
Amo02g1999 322 SUPERFAMILY HSP20-like chaperones 43 83 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1999 Amo-Chr2 65611501 65616493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1999 126 268 C2H2 Transcription Factor Family AT3G05760 83.217 4.67e-84 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1999 K12848 - gmx:100527057 310.842