Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1997 ATGGGATTCTCTATAGCTATTCAAGAACAAACACCACAAGAGGATCAAGAAGCAAAGCCTTTCATGGCTTCAAATAGTGGTAGTTTTAAGAGCATCAACTCAAGTACTACACCTACTCAACTTGAACCACTCCATCTTCATCATAATCATCATCATCATCATCATAATCAAATACAAGAGCAACAACAACACCAAATTTCCTTCGGAATGATGCCATCTTCTTCTTCTTCATCTATCCCAGGAAACTATCTAAACAGAGATTCCGGAGCTTATGATTTGGGTGAACTGGATCAAGCCTTTTTCATGTATCTTGATGGCCAACCTGACCCCTCCACTCTTCAAGACCAAAGACAGAACTCATCATCTTCAGGAATGAGGCCACCAACTCTCAACATTTTCCCCTCTCAGCCTATGCACGTAGACCCCCCGCCATCCAATTCCAAGGCTACAACGGAATTGGTTTCTGCCCAAACCAATGGTTCCAAGAGACCATCAGAGCCGTCCATGGAATCAACCAACCCGCGAAATAATGCCGCTTCTGCTCCTGAACCACCCAAACCTATAAAGCGAGAGAACAACCGCAAGGGCACAACTTCAAGTTCTGAACAAGAGGGACCAAAAACACCAGATCCTAAGACACTAAGAAGACTTGCCCAGAATAGAGAGGCAGCAAGGAAAAGCAGGCTGAGGAAAAAGGCGTATGTTCAGCAGCTAGAAACAAGTAGGATTAAGCTGAATCAGTTGGAACAAGAGTTACAGAGAGCCAGAGCTCAAGGCATTTTCATGGGTGGAAATGCACTTTTGGGAGGAGAACAAGGCCTTCCTCTTCCTATGACTACTATTACCTCAGAGGCAGCAATGTTTGACATGGAATATGGAAGGTGGTTAGAGGAGCACCACCGTCTAGTGTGCGAACTAAGAGCAGCGGTGCAGGAACACCTGCAGGAGAACGAGCTAAGAATGTACGTTGAAAATTGCTTGGGTCATTATGACCAAGTGATGAATCTGAAGAGCATTGTGGCCAAAACAGACGCATTTCATATTGTTTTTGGAATGTGGAAAACACCAGCTGAACGCTGTTTCATGTGGATCGGTGGCTTCAGGCCTTCTGAACTCATTAAGGTTATTATGGGTCAAATTGAGCCTCTTACGGAGCAACAAATATTAGGGATATGTGGGTTGCAACAAACAACACGTGAGGCAGAAGAAGCTCTATCCCAAGGGCTTGAAGCTCTCAATCAATCACTAACAGAAACCATAACATCAGATTCATTGAGTTCTCCACCAAACATGGTTAATTACATGGGACAAATGGCTGTGGCCATGAGCAAGCTTTCAACTATCGAAGGTTTCCTTAGGCAGGCAGATAATCTGAGGCAGCAAACACTGCACCGTCTGCATCAGATTCTAACAACACGGCAATCCGCAAGGTGTTTGCTGGCAATAGCGGAGTACTTCCATCGCCTTAGAGCTCTCAGTTCTCTTTGGATGTCACGCCCTCGCCAAGAATAA 1512 0.4497 MGFSIAIQEQTPQEDQEAKPFMASNSGSFKSINSSTTPTQLEPLHLHHNHHHHHHNQIQEQQQHQISFGMMPSSSSSSIPGNYLNRDSGAYDLGELDQAFFMYLDGQPDPSTLQDQRQNSSSSGMRPPTLNIFPSQPMHVDPPPSNSKATTELVSAQTNGSKRPSEPSMESTNPRNNAASAPEPPKPIKRENNRKGTTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLNQLEQELQRARAQGIFMGGNALLGGEQGLPLPMTTITSEAAMFDMEYGRWLEEHHRLVCELRAAVQEHLQENELRMYVENCLGHYDQVMNLKSIVAKTDAFHIVFGMWKTPAERCFMWIGGFRPSELIKVIMGQIEPLTEQQILGICGLQQTTREAEEALSQGLEALNQSLTETITSDSLSSPPNMVNYMGQMAVAMSKLSTIEGFLRQADNLRQQTLHRLHQILTTRQSARCLLAIAEYFHRLRALSSLWMSRPRQE* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1997 503 Pfam Seed dormancy control 303 377 IPR025422 GO:0006351|GO:0043565
Amo02g1997 503 Pfam bZIP transcription factor 212 250 IPR004827 GO:0003700|GO:0006355
Amo02g1997 503 ProSiteProfiles DOG1 domain profile. 285 499 IPR025422 GO:0006351|GO:0043565
Amo02g1997 503 MobiDBLite consensus disorder prediction 142 179 - -
Amo02g1997 503 MobiDBLite consensus disorder prediction 1 43 - -
Amo02g1997 503 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 215 230 IPR004827 GO:0003700|GO:0006355
Amo02g1997 503 SUPERFAMILY Leucine zipper domain 212 254 IPR046347 GO:0003700|GO:0006355
Amo02g1997 503 SMART brlzneu 208 274 IPR004827 GO:0003700|GO:0006355
Amo02g1997 503 MobiDBLite consensus disorder prediction 1 83 - -
Amo02g1997 503 MobiDBLite consensus disorder prediction 104 215 - -
Amo02g1997 503 Coils Coil 231 258 - -
Amo02g1997 503 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 210 254 IPR004827 GO:0003700|GO:0006355
Amo02g1997 503 MobiDBLite consensus disorder prediction 60 83 - -
Amo02g1997 503 CDD bZIP_HBP1b-like 212 264 - -
Amo02g1997 503 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 96 502 - -
Amo02g1997 503 Gene3D - 211 260 - -
Amo02g1997 503 MobiDBLite consensus disorder prediction 109 130 - -
Amo02g1997 503 PANTHER TRANSCRIPTION FACTOR TGA9 96 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1997 Amo-Chr2 65575639 65586987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1997 81 503 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 63.288 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo02g1997 DOG1 6.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1997 K14431 - gmx:100815176 749.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0146 16 1972622 1977964 Amo02g1997 02 65575639 65586987 PCT
Amo02g1997 02 65575639 65586987 Amo16g0146 16 1972622 1977964 PCT