Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1967 ATGGATTCAAATTCGCTTCAAGGCTATCAACTTGAACAACAACAAAGCAGTAGTTCTGGTTTGCTTCGTTATCGCTCTGCACCGAGTTCGCTTCTCGCGAATCTCACTCCAACTTTCACTGAATCCCAAGCCTTGCTCTCGAGATTAGCCAATAGTAATAGCAGTAGCAGCAAAAACAATATTTCCAAAAACGATACCGTTTCACATAGCTTCCAAGAATTCCCAGATACAAACACAAACACAAACACAAAAACAAACAATAAGGGTTGTGATTCGAAGGGTCTGAGGCGGATGAATTCTGGAGGGCGCGGATATGGTGGTGGTGGTGGATTGCCACCTCACTACCCAAGGAACACTTCTTCTTCTTCTTCTTCTTCTTGTTCATCTTCAATGGATGGGTCTTTAGGGTTGGTTATGGGTTCAATGGGAATGGACCAAAAAGGGTTTGGCGTTTCTTCTTCTTTAAATCTTCTCAGGCAGAATAGTTCCCCTGCTGACCTTTTCTCCAACGTTTCATTTCAAAATGGATTTGCTACCATGAAAGGTGTCGGGAACTATGGTCATGTTAACAGCACCAGCGAAGAACTTAGTCCATCGATGAACAGATTGAAGAATCAGATTAGCTTCTCATCAAGAACTGCTTCTTCCTTGGGAATGTTGTCGCAGATCTCCGAAATAGGGAACGAGGAAATTGGGGCAAATAGCCCTGAAGATGGGAGGCAGGGTGGTAGCAATGGTGATGCCTTGCATTACAGCCCCGGATTCTGCTATGGTTCTTGGAGTGATGCACCACAACACTCTGAAAACCTCACTGGCTTGAAAAGAGGGCGAAGTAGCAATGGAAAGTTGTTTCCTGATGTTCAGAATGGAGAGCTAGGAAATCAAGTTCATATGCTATCACATCACTTGAGTTTGCCGAAAACTTCATCAGAGATGATTGGTATGGAGAATCTGCTTCAGTTCCCAGATTCTGTTCCTTGTAAAATCAGAGCGAAGCGAGGCTGCGCTACTCATCCCCGAAGCATAGCTGAAAGGGTACGAAGAACACGGATCAGTGAACGAATGAGGAAATTGCAAGAGCTGGTCCCAAACATGGACAAGCAAACCAACACAGCAGACATGTTGGACTTGGCGGTTGACTACATTAAAGATCTTCAGAAACAATTCAAGAATCTAAGTGAAAAGAGGGCAAACTGCAAATGTATAAGCATGCGGAGAGCAGATACAAATCAAATTGTTTAA 1242 0.438 MDSNSLQGYQLEQQQSSSSGLLRYRSAPSSLLANLTPTFTESQALLSRLANSNSSSSKNNISKNDTVSHSFQEFPDTNTNTNTKTNNKGCDSKGLRRMNSGGRGYGGGGGLPPHYPRNTSSSSSSSCSSSMDGSLGLVMGSMGMDQKGFGVSSSLNLLRQNSSPADLFSNVSFQNGFATMKGVGNYGHVNSTSEELSPSMNRLKNQISFSSRTASSLGMLSQISEIGNEEIGANSPEDGRQGGSNGDALHYSPGFCYGSWSDAPQHSENLTGLKRGRSSNGKLFPDVQNGELGNQVHMLSHHLSLPKTSSEMIGMENLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQKQFKNLSEKRANCKCISMRRADTNQIV* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1967 413 Pfam Helix-loop-helix DNA-binding domain 340 386 IPR011598 GO:0046983
Amo02g1967 413 MobiDBLite consensus disorder prediction 268 288 - -
Amo02g1967 413 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 335 385 IPR011598 GO:0046983
Amo02g1967 413 Gene3D - 336 406 IPR036638 GO:0046983
Amo02g1967 413 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 13 405 - -
Amo02g1967 413 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 338 399 IPR036638 GO:0046983
Amo02g1967 413 PANTHER TRANSCRIPTION FACTOR BHLH130 13 405 - -
Amo02g1967 413 SMART finulus 341 391 IPR011598 GO:0046983
Amo02g1967 413 MobiDBLite consensus disorder prediction 1 21 - -
Amo02g1967 413 MobiDBLite consensus disorder prediction 51 130 - -
Amo02g1967 413 MobiDBLite consensus disorder prediction 51 93 - -
Amo02g1967 413 MobiDBLite consensus disorder prediction 115 130 - -
Amo02g1967 413 Coils Coil 375 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1967 Amo-Chr2 64441243 64444458 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1967 1 390 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 45.792 1.43e-86 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo02g1967 HLH 4.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1967 - - aip:107625483 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g1782 12 85725200 85728152 Amo02g1967 02 64441243 64444458 hybridization
Amo16g0160 16 2120094 2123039 Amo02g1967 02 64441243 64444458 PCT
Amo02g1967 02 64441243 64444458 Amo16g0160 16 2120094 2123039 PCT