Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1953 ATGGAGCACGCCGCACTAGACTCCATCCAATTCAACGAGCAAATCCAGGGGCTAATGGCTCCGGCGCCGGAATCCACCAACTCCTTCACGGCGCTCCTCGAGCTACCTCCGCCGCAGGCCGTCAAGCTACTCCACTCGCCGGATAAGGCTCCCACCGGTTCCGAAAAACCGCCCTGCCACGCCAGCATCCTGAAACCCTACCCCTCCATCATGAGCATCATCGACGGAACCCGCAAGCTCACGTTCCCTTCCAACACCGCCCTAATCGAGCGCGCTGCGAGGTTCTCCGTGTTCGCCGGAGAGGGACCGCTGGCTCCACCGGTGGCGGAGGTAAAAAACGAGCCGCCGGAAACCGATTCCAACCCGAGCTCGACTCAGTGCGATCCTGCGGTTGAGAACAAGGGCGCGAAGAGGAAGGAGCGAGAGAAGAAGGTTAAGGCGAGGTCGAAGAAGAGCAAGAGTGTCGCTGCCGCCGAAAGTTCCGGCGACGGCGAGAAGCTTCCGTACGTTCACGTTCGCGTTCGTCGAGGTCAAGCCACTGATAGCCATAGCTTAGCAGAGAGGGCAAGGAGAGAGAAGATAAATGCTCGGATGAAACTTTTGCAAGAGCTGGTCCCCGGTTGCAACAAGATATCAGGCACAGCATTGGTTCTGGATGAAATCATCAACCATGTCCAATCTCTACAGCGACAAGTGGAGTTTTTATCAATGAAACTAGCAGCAGTTAACCCAAGAATTCATTTCAACCTTGACAGCATAATGCCTAATGAAGGGGCATCTCTAATGGACAGTAGCATTCCTAACATGGTTTCACCCCTCATGTGGCCGGAAATCCCAAACAATGGAAATAGAGAACAATATCAGCAACCATGGCAATTTGATGCATTCCAGCAACCAGTTTGGGGAAGGGAAGAAGAAAACACCAATTTCATGACTCCCGAAAACTCAATGTTGAGTTATGATTCATCAGCTAATTCAGGGATTGCAGCTGTCTTTGCATTAATGAAGATCACAAACAAATCTGGGAGGGGATGCTAA 1038 0.5231 MEHAALDSIQFNEQIQGLMAPAPESTNSFTALLELPPPQAVKLLHSPDKAPTGSEKPPCHASILKPYPSIMSIIDGTRKLTFPSNTALIERAARFSVFAGEGPLAPPVAEVKNEPPETDSNPSSTQCDPAVENKGAKRKEREKKVKARSKKSKSVAAAESSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMKLAAVNPRIHFNLDSIMPNEGASLMDSSIPNMVSPLMWPEIPNNGNREQYQQPWQFDAFQQPVWGREEENTNFMTPENSMLSYDSSANSGIAAVFALMKITNKSGRGC* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1953 345 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 327 - -
Amo02g1953 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 248 IPR036638 GO:0046983
Amo02g1953 345 Coils Coil 218 238 - -
Amo02g1953 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 228 IPR011598 GO:0046983
Amo02g1953 345 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 327 IPR024097 GO:0006355
Amo02g1953 345 CDD bHLH_AtBPE_like 168 253 - -
Amo02g1953 345 SMART finulus 184 234 IPR011598 GO:0046983
Amo02g1953 345 MobiDBLite consensus disorder prediction 116 130 - -
Amo02g1953 345 Gene3D - 175 249 IPR036638 GO:0046983
Amo02g1953 345 MobiDBLite consensus disorder prediction 106 162 - -
Amo02g1953 345 Pfam Helix-loop-helix DNA-binding domain 182 229 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1953 Amo-Chr2 63337194 63343329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1953 5 319 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 50.420 7.42e-89 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo02g1953 HLH 1.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1953 - - lang:109334778 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g1770 12 84834092 84840233 Amo02g1953 02 63337194 63343329 hybridization
Amo16g0174 16 2359274 2364498 Amo02g1953 02 63337194 63343329 PCT
Amo02g1953 02 63337194 63343329 Amo16g0174 16 2359274 2364498 PCT