Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1936 ATGGCGCCAAAGAATAAGAAGAGAGCTAGGGTTTCCAACGACGAAGAAGAAATCGAATATGAACACCCACACTCCCCTCAGAACAACAACGAAAACACCCTCTATCAGGTACTTGGTGTAGAGAGAACAGCATCACAACAGGAAATAAAGAAGGCTTATTACAAGTTAGCATTGAGGCTGCATCCTGACAAGAACCCTGGTGATGAGGAAGCTAAAGCAAAATTTCAGCAACTGCAAAATATTATCTCGATTCTTGGGGATGAAGAGAAACGAGCCATTTATGATCAGACTGGTTGTGTTGATGATGCTGACCTTGCCGGGGATGTTGTCCAGAATCTTCACAACTACTTTAGAACAATGTACAAGAAGGTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATAGGGGATCTGACTCAGAGAAAAATGATTTGATTGATTTGTACAAGAAGTGCAAGGGTCATATGAACAGGCTATTCTGTTCAATGCTTTGTTCTGATCCCAAATTTGATTCTCACCGATTCAAGGATATTCTTGATGAGGCCATAGCAGCTGGAGAACTTAAAGAAACAAAAGCTTATAAGAAATGGGCAAAAAGAATATCAGAAATCAAGCCACCAACTAGTCCGTTAAGGAGGAGGGTCAAACCAAGTAAGAAACCAGAAACAGATCTTTATGCCATCATCTCACAACGTCGAAATGAGAGAAGAGACAAGTTTGAATCTATGTTTTCATCTCTAGTTTCAAAATATGGTGGAAGTAATGTGCCGGAACCCTCTGAAGAGGAATTTGAAGCTGCGCAAAGGAAGATGGAAAGCCGACGTTCCGCAAAGAAATCAAAGCGGAAATAA 855 0.4082 MAPKNKKRARVSNDEEEIEYEHPHSPQNNNENTLYQVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKAKFQQLQNIISILGDEEKRAIYDQTGCVDDADLAGDVVQNLHNYFRTMYKKVTEADIEEFEANYRGSDSEKNDLIDLYKKCKGHMNRLFCSMLCSDPKFDSHRFKDILDEAIAAGELKETKAYKKWAKRISEIKPPTSPLRRRVKPSKKPETDLYAIISQRRNERRDKFESMFSSLVSKYGGSNVPEPSEEEFEAAQRKMESRRSAKKSKRK* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1936 284 SMART dnaj_3 32 90 IPR001623 -
Amo02g1936 284 SUPERFAMILY Chaperone J-domain 32 116 IPR036869 -
Amo02g1936 284 PRINTS DnaJ domain signature 35 53 IPR001623 -
Amo02g1936 284 PRINTS DnaJ domain signature 53 68 IPR001623 -
Amo02g1936 284 PRINTS DnaJ domain signature 70 90 IPR001623 -
Amo02g1936 284 PRINTS DnaJ domain signature 90 109 IPR001623 -
Amo02g1936 284 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 5 284 - -
Amo02g1936 284 MobiDBLite consensus disorder prediction 1 31 - -
Amo02g1936 284 MobiDBLite consensus disorder prediction 251 284 - -
Amo02g1936 284 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 5 284 IPR042977 -
Amo02g1936 284 ProSiteProfiles dnaJ domain profile. 33 98 IPR001623 -
Amo02g1936 284 Pfam DnaJ domain 34 95 IPR001623 -
Amo02g1936 284 CDD DnaJ 33 87 IPR001623 -
Amo02g1936 284 Gene3D DnaJ domain 19 112 IPR036869 -
Amo02g1936 284 MobiDBLite consensus disorder prediction 7 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1936 Amo-Chr2 62824412 62827495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1936 35 95 C2H2 Transcription Factor Family AT1G74250 40.909 1.63e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1936 K09529 - gmx:100781463 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g1759 12 84476506 84479560 Amo02g1936 02 62824412 62827495 hybridization
Amo16g0186 16 2529903 2532655 Amo02g1936 02 62824412 62827495 PCT
Amo02g1936 02 62824412 62827495 Amo16g0186 16 2529903 2532655 PCT