Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1892 ATGGATTTTAAATTTCCAAGTTCACACGCACAAAATAATAAAAATAATAATAAAGATAATACTAAAATATCAATAATACACTTAACATATAAGGCTTTATTATATTCTTTCCTTTGCATTCAACCTTTATCCCCATCTCGTACAGAGACAAAAAAACAGAGGGGGAAGGAAACCACAAAACAAAAACATCATTCTAATAAGTTCTCATCAGATCTTATTACAATGATGATACCCCAGTTGCATAGTATGATTGCAACAATAATAATTGTTGTTGTTGTTGCAAAGATAAATGTGGGAGTGAATTCAGCTCCAGAAGCTGATAAGGTAACCAATTTGCCAGGGCAACCACCAGTGAAGTTCCAGCAATATGCTGGTTATATTACAGTGGATGAGAAGCAACAAAGATCTTTGTTTTACTACTTTGCTGAAGCACAAGTTGAACCTGCTTCCAAGCCATTGGTTCTATGGTTAAATGGAGGGCCTGGCTGTTCTTCTGTTGGAGCCGGAGCTTTCGTCGAGCATGGTCCATTTAAACCAAGCGAAAATGTTCTTCTCAAGAATGATTATAGTTGGAACCAAGAGGCAAATATGCTGTACTTGGAATCACCGGCTGGTGTTGGTTTCTCCTACTCTGCCAATAAATCTTTCTATGAATATGTTAATGATGAAATGACAGCAAGGGATAATCTTGTATTCTTACAGAATTGGTTCACTAAATTCCCAGAGTACAAAAACAATGACTTCTTTATTACAGGGGAGAGTTATGCAGGTCACTATGTACCACAACTTGCACAACTCATTGTTCAAAGCAAGACAAAGTTCAATTTCAAGGGTATAGCAATAGGAAACCCTCTTATGGAATTCAACACAGATTTCAATTCAAGGGCAGAGTATTTCTGGTCCCATGGACTAATATCTGATTCAACTTATGAAATGTTCACTAAAGTCTGTAACTACTCCCAAATTAGGAGACAACTTCAAAGTGGAACATTAAATGGGGTTTGTGCAGCCGTAAATAAAATAGTGTCCACAGAAGTTGGGAGATATGTTGATGCATATGATATCACTCTTGATGTGTGCCTATCAGCAGCAGATCAACAAGCTTATGTGCTCAATCAACTTAGCCAAGTGCAAGAGGGAGAGAAGATTGATGTGTGTGTGGAAGATGAAACGATCACATATTTGAATAAAAAAGATGTGCAACAAGCTTTCCATGCTAAGCTTGAAGGGATCACTAGATGGTCAACTTGCAGCGATGGTGATCAAGATTCAGTTCTGCCATTAACGGGAACAAGAACGCTTGTGAATGGGTTGGCTAAGGAGTTAGGACTTAATACAACAGAGTCTTATAGAGCATGGTTTGGAGGAAGACAGGTAGCTGGATGGACACAAGTATATGGTGACATGTTATCGTTTGCTACTATAAGAGGAGCATCTCATGAAGCTCCTTTTTCACAGCCAGAGAGATCACTTGTGCTGCTGAAAGCATTTGTTGAAGGAAAATCTCTTCCGGGAATAATCTCTCTAACGTGA 1533 0.3836 MDFKFPSSHAQNNKNNNKDNTKISIIHLTYKALLYSFLCIQPLSPSRTETKKQRGKETTKQKHHSNKFSSDLITMMIPQLHSMIATIIIVVVVAKINVGVNSAPEADKVTNLPGQPPVKFQQYAGYITVDEKQQRSLFYYFAEAQVEPASKPLVLWLNGGPGCSSVGAGAFVEHGPFKPSENVLLKNDYSWNQEANMLYLESPAGVGFSYSANKSFYEYVNDEMTARDNLVFLQNWFTKFPEYKNNDFFITGESYAGHYVPQLAQLIVQSKTKFNFKGIAIGNPLMEFNTDFNSRAEYFWSHGLISDSTYEMFTKVCNYSQIRRQLQSGTLNGVCAAVNKIVSTEVGRYVDAYDITLDVCLSAADQQAYVLNQLSQVQEGEKIDVCVEDETITYLNKKDVQQAFHAKLEGITRWSTCSDGDQDSVLPLTGTRTLVNGLAKELGLNTTESYRAWFGGRQVAGWTQVYGDMLSFATIRGASHEAPFSQPERSLVLLKAFVEGKSLPGIISLT* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1892 510 SUPERFAMILY alpha/beta-Hydrolases 100 504 IPR029058 -
Amo02g1892 510 Gene3D - 420 503 - -
Amo02g1892 510 Gene3D - 386 419 - -
Amo02g1892 510 PRINTS Carboxypeptidase C serine protease (S10) family signature 200 210 IPR001563 GO:0004185|GO:0006508
Amo02g1892 510 PRINTS Carboxypeptidase C serine protease (S10) family signature 470 483 IPR001563 GO:0004185|GO:0006508
Amo02g1892 510 PRINTS Carboxypeptidase C serine protease (S10) family signature 236 261 IPR001563 GO:0004185|GO:0006508
Amo02g1892 510 PRINTS Carboxypeptidase C serine protease (S10) family signature 187 199 IPR001563 GO:0004185|GO:0006508
Amo02g1892 510 Pfam Serine carboxypeptidase 113 419 IPR001563 GO:0004185|GO:0006508
Amo02g1892 510 Pfam Serine carboxypeptidase 420 500 IPR001563 GO:0004185|GO:0006508
Amo02g1892 510 Gene3D alpha/beta hydrolase 103 362 IPR029058 -
Amo02g1892 510 PANTHER CARBOXYPEPTIDASE 87 419 - -
Amo02g1892 510 PANTHER CARBOXYPEPTIDASE 420 507 - -
Amo02g1892 510 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 87 419 IPR001563 GO:0004185|GO:0006508
Amo02g1892 510 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 420 507 IPR001563 GO:0004185|GO:0006508
Amo02g1892 510 MobiDBLite consensus disorder prediction 49 66 - -
Amo02g1892 510 ProSitePatterns Serine carboxypeptidases, serine active site. 250 257 IPR018202 GO:0004185
Amo02g1892 510 MobiDBLite consensus disorder prediction 46 66 - -
Amo02g1892 510 ProSitePatterns Serine carboxypeptidases, histidine active site. 470 487 IPR033124 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1892 Amo-Chr2 60854858 60862159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1892 415 503 Calmodulin-binding Proteins AT2G22960 26.966 1.50e-08 52.8