Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1884 ATGAACTCAGCGGCGTCACAGGATCACTGGAGGAGTTACTTCAGGAAAGCGAATTCCGACATATTCAGCATCATTGACAACGCCATCACGGTGGCCGCTTCCGATTGCCCCAAGGAATTCAGGCTTCGCCGTGACGCCATTGCCGAGCTCCTCTTCTCCTGTAGGCTCGCGCGGTGCCGTGGATGTGACCGAGTGGAGCTCGCCGTCGATGGAGGCAGCGGCAAAGATGATTGTGGTGGTGGCGGCGGCGGCGGCCGCAGGAGCGGTGAGTCCGAGGTCGAGACGGGTGGGAGTAAAGAGAGCAAAGTCAACAGCAGCAGAGATGATAGGGGAGAGGTGAATGTTCAGATCGTGAGCAATTACAGCTATGGGGAAGCAGAAGCCTTGACGGATGAGATTGAAGAACAGTCTCTGTATGCTGATGAGGTCTTCAGGATCAGACAGGTTTTGCTTAATTCTCAAGAAGAGTCTGATTCAGTAATATTCGAGTCGTTGCGGAGGCTTCAGCTGATGGAGCTCACTGTGGATCTTCTGAAGGCCACTGAGATTGGTAAGGCTGTCACTCCTCTTCGAAAGCACAGCTCGAGGGATATTCGCCAACTTGCACGGACACTTATTGATGGCTGGAAAGTTATGGTGGATGAGTGGGTCAAGGCTACCACACCTATCACAGGTTCAGAAGGTACCCCAGATTCAGTAAAGCCATCTACAATTGATGAGGAAGAAGGGCTTCCATCACCTCCCATGGATGAAGGGGCTTTCTTTGCCACTCAAGCTGGTTCAATGGAACTCTCCCAGTTCTTTGATGGCATGGATGATTATGGAAATCCTCAACAGAGTGGGGAATTCATCAAGAACCGTGAAAGTGGCAGAAGGGCATCGCTGGATAATCAACATATTGTAGAGATGAAAATTCAAGCTTCAGCCAATGACACAAACAAGGACTTTAAGGGTCAGCAAGCCATGAAACATGAGACTACTGTGAAGCTAACTAAGCTGGTAAACACTGATTCTGGCCCTGGCAGACCGCCAAAAACTACCATGCAGATAAAAGGGACTGTGAAACAGAAGATGCCTCAAAAGATAGAGACAAGTGTCATCCCAAAGCAGCCTCAGGCTAGTAATCAGGATAAATCCAAGCCTTCGGATGATTCTTCATTGAAAGTGAAGCTAGAAGCCGCTAAGAGAAAACTTCAGGAGCGGTATCAACAAGCTGAAAATGCTAAGAGGCAGCGAACGGTACAGGTTATGGAGTTGCACGACCTGCCCAAGCAAGCGGTTGCACACCGGAATCCACATGTGAAGCCTGGAATGCATAAGAGGAAATTGAATAACGGACGAAGATAG 1347 0.4952 MNSAASQDHWRSYFRKANSDIFSIIDNAITVAASDCPKEFRLRRDAIAELLFSCRLARCRGCDRVELAVDGGSGKDDCGGGGGGGRRSGESEVETGGSKESKVNSSRDDRGEVNVQIVSNYSYGEAEALTDEIEEQSLYADEVFRIRQVLLNSQEESDSVIFESLRRLQLMELTVDLLKATEIGKAVTPLRKHSSRDIRQLARTLIDGWKVMVDEWVKATTPITGSEGTPDSVKPSTIDEEEGLPSPPMDEGAFFATQAGSMELSQFFDGMDDYGNPQQSGEFIKNRESGRRASLDNQHIVEMKIQASANDTNKDFKGQQAMKHETTVKLTKLVNTDSGPGRPPKTTMQIKGTVKQKMPQKIETSVIPKQPQASNQDKSKPSDDSSLKVKLEAAKRKLQERYQQAENAKRQRTVQVMELHDLPKQAVAHRNPHVKPGMHKRKLNNGRR* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1884 448 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 135 227 IPR035441 -
Amo02g1884 448 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 447 IPR044805 -
Amo02g1884 448 MobiDBLite consensus disorder prediction 73 109 - -
Amo02g1884 448 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 447 - -
Amo02g1884 448 MobiDBLite consensus disorder prediction 349 380 - -
Amo02g1884 448 ProSiteProfiles TFIIS N-terminal domain profile. 141 216 IPR017923 -
Amo02g1884 448 CDD TFIIS_I 140 214 - -
Amo02g1884 448 MobiDBLite consensus disorder prediction 222 245 - -
Amo02g1884 448 MobiDBLite consensus disorder prediction 92 109 - -
Amo02g1884 448 Coils Coil 388 415 - -
Amo02g1884 448 MobiDBLite consensus disorder prediction 331 389 - -
Amo02g1884 448 MobiDBLite consensus disorder prediction 424 448 - -
Amo02g1884 448 MobiDBLite consensus disorder prediction 433 448 - -
Amo02g1884 448 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 132 224 IPR035441 -
Amo02g1884 448 Pfam TFIIS helical bundle-like domain 165 213 IPR017923 -
Amo02g1884 448 SMART TFS2_5 140 215 IPR003617 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1884 Amo-Chr2 60162929 60166563 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Amo02g1884 Med26 1.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1884 - - aip:107625382 832.402