Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1851 ATGTATCATCATCAAGGGAAGAACATGCACTCTTCTTCAAGAATGCCAATCCCCTCTGAGAGGCACATGTTCCTTCAAACAGGAAACGGGTCTGGTGATTCTGGACTTGTTCTCTCAACTGATGCTAAGCCACGATTGAAATGGACGCCGGATCTTCATGCCAGGTTCATAGAAGCAGTGAACCAGTTAGGTGGAGCTGACAAAGCAACTCCAAAAACAGTAATGAAACTCATGGGGATTCCAGGTCTTACTTTATATCATCTGAAGAGCCATCTGCAGAAGTACAGATTGAGCAAGAATTTGCATGGACMAAMTAACACTGTAACACACAAAATCACAGCAACAAATGTGGGGGCAACAACAAGTGAAAGATCACTTTCAGAACCCAGTGGAACTCATATGAACAAGTTAAGCCTTGTCCCACAGACTAACAAAGATTTACATATAAGTGAGGCACTGCAGATGCAAATTGAAGTGCAGCGAAGGCTAAATGAACAACTTGAGGTACAAAGACAGTTGCAGCTTCGGATAGAGGCACAAGGAAAATACCTGCAGTCTGTGCTAGAGAAAGCTCAAGAGACACTTGGTAGACAAAATTTGGGAATGGTAGGACTTGAAGCTGCTAAAGTTCAACTATCAGAGCTGGTGTCCAAGGTCTCCTCCCAGTGCTTGAACTCGGCATTTTCAGAGCTGAAGGAACTACAAGGATTTTGCCCCCAGCAACCACAAACCAACCAGCCAAATGATTGCTCAATAGATAGTTGCCTCACATCTTGTGAAGGGTCACAGAAGGAGCAAGAGATACAGAATGGTGGGATAGGTTTAAGGCACTTAAATGGCCATGGCCATGCATTCATGGAAAGAAAGGGAGGCACAGAAGCTCCTAAATGGAGTAATGAAGTGAAAAACAACACCTTTCTAGCTCCATTAGGCAAGAATTCAGAAAGAAGTAGCTATGGTGCAGAGAGAAGCAGTGGAAACTTGTCTATGAGCATTGGACTTGAAAGGGAAACTGAGAATGGAAGCAGCATGTACACTGAGAGTCACACTCACACAGATGGTGAGTTCTGGCACAGAAACAGCAATAGGACAGAACCAAAGAATGAAGCAATGGATGGAGGAAGAGGTTCCCATGATTATAGGTTGCCTCCTCCATACTTTTCAGCAGCAAGATTGGATTTAAACTCACATGGGGATAACAATGAAGCTGCAACAACAACAACAAGCTGTAAACAACTGGACTTGAACAGATTCAGTTGGAGCTGA 1266 0.4368 MYHHQGKNMHSSSRMPIPSERHMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGXXNTVTHKITATNVGATTSERSLSEPSGTHMNKLSLVPQTNKDLHISEALQMQIEVQRRLNEQLEVQRQLQLRIEAQGKYLQSVLEKAQETLGRQNLGMVGLEAAKVQLSELVSKVSSQCLNSAFSELKELQGFCPQQPQTNQPNDCSIDSCLTSCEGSQKEQEIQNGGIGLRHLNGHGHAFMERKGGTEAPKWSNEVKNNTFLAPLGKNSERSSYGAERSSGNLSMSIGLERETENGSSMYTESHTHTDGEFWHRNSNRTEPKNEAMDGGRGSHDYRLPPPYFSAARLDLNSHGDNNEAATTTTSCKQLDLNRFSWS* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1851 421 MobiDBLite consensus disorder prediction 1 30 - -
Amo02g1851 421 Pfam MYB-CC type transfactor, LHEQLE motif 148 194 IPR025756 -
Amo02g1851 421 Coils Coil 150 170 - -
Amo02g1851 421 MobiDBLite consensus disorder prediction 344 384 - -
Amo02g1851 421 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 43 98 IPR006447 GO:0003677
Amo02g1851 421 MobiDBLite consensus disorder prediction 1 15 - -
Amo02g1851 421 PANTHER MYB-RELATED PROTEIN 2 2 421 - -
Amo02g1851 421 Pfam Myb-like DNA-binding domain 45 96 IPR001005 -
Amo02g1851 421 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 40 100 IPR017930 -
Amo02g1851 421 Gene3D - 42 100 - -
Amo02g1851 421 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 421 IPR044848 GO:0003700
Amo02g1851 421 MobiDBLite consensus disorder prediction 351 376 - -
Amo02g1851 421 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1851 Amo-Chr2 58384700 58387391 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1851 75 421 G2-like Transcription Factor Family AT3G04030 49.859 1.48e-91 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo02g1851 Myb_DNA-binding 3.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1851 - - gmx:100810396 598.201