Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1848 ATGCAACAAACAACAATGGCAGTTTCTGGAACAAAAACCATTTCTCATGAAACCCTCACACAAGAATTGTTACAATCAGAAGCAGCAGAACCAGTGAGCAAGCAGAACTCAATCCTCTCACTCACACTTGATGAGATCCAATGCAAGAGTGGTAAGAGCTTTGGATCCATGAGCATGGATGAATTCTTAGCCAGCATTTGGAGCTCTGAGGACAACAACAACAACAACAACAACACAAATCAAACCCTTCATGATGAACAAGCTTCTCAACACATCATGAAAAGTGCTGGAACAAAAACAGAACAACAACAACAAGGTTCATTCTGTGTCATCCCATCTCCAATTTGCAAGAAAACTGTGGAGGAAGTTTGGTCTGAGATCCACAAAGACCAAGAACCACAACAAAGGGATGAATCTAACAACATTGGAATGAATGAGGCACTTAGAAAGCAACAAACACTTGGGGAAATGACATTGGAGGATTTTCTAATTAAAGCTGGTGTTGTACAAGAATCAAAATTGACATCAAAATCAAGAGTTGCTACTACAACAATAATGCCTTTAGTATTTCAGAATCATGTTAGCAACATTGCAAGTAGTAATAGACCAATGGATCCAAGTTATGCAGTGAGGTCTCCTATGGGGGTAGGATTCCCTAGCCAACAAAATCTTGGGAACCATGGGACTAATAACAATGGACTTGGAACATATCCAATTTTGTTACAGAATAATAATAGCTCCACAAGGCTTCTGGACTCGAGCGTGGGCAGCAGCAGGAAGAGGGTAATTGATGGTCCTCCAGAAGTGGTGGTAGAGCGAAGGCAGCGCAGAATGTTGAAGAATCGAGAATCTGCCGCAAGATCACGGGCGAGAAGACAGGCATATACGGTTGAACTAGAAGCAGAGCTGAATGTGCTAAAGGAAGAGAATGAGAATCTAAAACAAATTCTGGATGAAGCAGAGCTCAAGAGGAAACAAGAGATTTCACAGAGGAAGCACACAACAAAGCCACAAAAGAGGACAGAAAAATTGAGGGAAATAAGAAGGACTATTAGTGCAGCTTGGTGA 1068 0.4148 MQQTTMAVSGTKTISHETLTQELLQSEAAEPVSKQNSILSLTLDEIQCKSGKSFGSMSMDEFLASIWSSEDNNNNNNNTNQTLHDEQASQHIMKSAGTKTEQQQQGSFCVIPSPICKKTVEEVWSEIHKDQEPQQRDESNNIGMNEALRKQQTLGEMTLEDFLIKAGVVQESKLTSKSRVATTTIMPLVFQNHVSNIASSNRPMDPSYAVRSPMGVGFPSQQNLGNHGTNNNGLGTYPILLQNNNSSTRLLDSSVGSSRKRVIDGPPEVVVERRQRRMLKNRESAARSRARRQAYTVELEAELNVLKEENENLKQILDEAELKRKQEISQRKHTTKPQKRTEKLREIRRTISAAW* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1848 355 SMART brlzneu 269 333 IPR004827 GO:0003700|GO:0006355
Amo02g1848 355 Pfam bZIP transcription factor 273 321 IPR004827 GO:0003700|GO:0006355
Amo02g1848 355 SUPERFAMILY Leucine zipper domain 273 319 IPR046347 GO:0003700|GO:0006355
Amo02g1848 355 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 29 355 IPR043452 GO:0003700|GO:0045893
Amo02g1848 355 Coils Coil 296 330 - -
Amo02g1848 355 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 271 319 IPR004827 GO:0003700|GO:0006355
Amo02g1848 355 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 276 291 IPR004827 GO:0003700|GO:0006355
Amo02g1848 355 PANTHER BZIP TRANSCRIPTION FACTOR 29 355 - -
Amo02g1848 355 Gene3D - 271 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1848 Amo-Chr2 58359858 58361752 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1848 15 355 bZIP Transcription Factor Family AT3G44460 46.067 1.92e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo02g1848 bZIP_1 7e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1848 K14432 - gmx:100799576 289.656