Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1835 ATGGAATTCGAACTCCCAAACAAGGCCTTAACCACCACGCGCTTTTCGGAGCTGAATCCGCTGCTATCAGAGAAGGTTCTCGAAGCCTTATCGGAATCCGGGTTCAACTTCTGCACGCCGGTTCAAGCCGCCACCATTCCCCTTGCTCTGCAGCTTCAAGGATGTCGCCGAATAATCATATCCCCCACAAGGGAGCTATCACATCAAATATATCATGTTGCACAACCTTTCATTTCAACTTTACTGAATGTTAAGTCCATGCTGCTTGTTGGTGGAGTTGAAGTGAAATCAGACATGAAGAAGATAGAGGAAGAAGGCGCTAACATACTAATTGGCACACCTGGGCGGTTGTATGACATAATGAGCCGGATAGATTTCTTGGATTTCAAAAACTTCGAGATTTTGATTTTAGACGAGGCTGATAGACTTTTAGATATGGGATTCCAGAAGCAGATAACTTCCATTATATCTCTTTTGCCTAAGCTTCGAAGAACTGGCCTGTTTTCTGCTACTCAAACTGAGGCTGTTGAAGAGCTTGCTAGAGCAGGATTAAGAAATCCTGTGAGGGTTGAAGTTCGGGCAGAGGCGAAACTTTTAAATGCTCCTGCAGCATCAAAACAACCTGAATCTACAAAAACACCTTCTGGGCTTCAAATTGAGCTTGTTGTCATTTTGATTTTGCAATACTTGGAATGTGAGGCAGATAAGAAGCCATTACAGCTAGTAGACATCCTTATTAAGAACCGCTCAAGAAAAGTTATAATATATTTCATGACTTGTGCTTGCGTTGACTATTGGGGAGTTGTCCTTCCACGCCTTTCTGTTTTGAAAGGCTTCTCCTTGGTTCCTCTTCATGGAAAGATGAAGCAGACTGTTAGGGAGAAAGCATTAGCCTCCTTTACATCCCTTTCAAATGGAGTTCTGCTATGTACAGATGTTGCAGCACGTGGACTTGACATACCAGGTGTAGATTGTATAGTGCAGTATGATCCTCCTCAGGATCCAAATGTTTTCATACACAGAGTTGGTCGAACTGCTCGGCTGGGTAAACAAGGTCATGCAGTTGTCTTCTTATTGCCAAAGGAGGAGTCTTACGTAGAATTCCTACGTATAAGAAGAGTCCCTCTTCAAGAGAGAAAATGCTCTGATGATGCACCTGATGTTGTACCTCAGATTCGTTCTGCTGCGAAAAAAGATCGTGATGTTATGGAGAAAGGAGTCAGGGCATTTGTTTCCTACATCCGTGCYTACAAGGAGCATCACTGTTCATATATTTTTAGGTGGAAAGAACTTGAAATTGGTAAATTGGCCATGGGACATGGCTTATTGCAGCTTCCTCTAATGGCAGAGGTAAAACATCACTCACTTTCTACTGAGGGATTTGTACCAGTTGATGATATCAATTTGGAGGACATTAAATACAGAGATAAATCTCGTGAAAAACAAAGGAAGAAAAACCTGCAAGCAATGAAAGAAGCGAAAGAGAAGGAGAAAGAGGCAAAACCAGAAAAGCCAAGCAAAACTCCCAGTGCACCTACTGCCATGAGGAAGAAAACAGCCCGACAGAGACGTGCTCAGCAGACAATTGAAGATGAGGAAGAGTTGATGCAAGATTACCGCTTGTTGAAGAAACTGAAGAAAGGGACTATAGATGAGAATGAATATGCTAAGTTGACAGGCGCTGAGGAATTACTCTGA 1698 0.427 MEFELPNKALTTTRFSELNPLLSEKVLEALSESGFNFCTPVQAATIPLALQLQGCRRIIISPTRELSHQIYHVAQPFISTLLNVKSMLLVGGVEVKSDMKKIEEEGANILIGTPGRLYDIMSRIDFLDFKNFEILILDEADRLLDMGFQKQITSIISLLPKLRRTGLFSATQTEAVEELARAGLRNPVRVEVRAEAKLLNAPAASKQPESTKTPSGLQIELVVILILQYLECEADKKPLQLVDILIKNRSRKVIIYFMTCACVDYWGVVLPRLSVLKGFSLVPLHGKMKQTVREKALASFTSLSNGVLLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRVPLQERKCSDDAPDVVPQIRSAAKKDRDVMEKGVRAFVSYIRAYKEHHCSYIFRWKELEIGKLAMGHGLLQLPLMAEVKHHSLSTEGFVPVDDINLEDIKYRDKSREKQRKKNLQAMKEAKEKEKEAKPEKPSKTPSAPTAMRKKTARQRRAQQTIEDEEELMQDYRLLKKLKKGTIDENEYAKLTGAEELL* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1835 565 Coils Coil 515 542 - -
Amo02g1835 565 Pfam DEAD/DEAH box helicase 51 179 IPR011545 GO:0003676|GO:0005524
Amo02g1835 565 Gene3D - 228 459 IPR027417 -
Amo02g1835 565 SMART ultradead3 34 220 IPR014001 -
Amo02g1835 565 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 136 144 IPR000629 -
Amo02g1835 565 PANTHER RNA HELICASE 23 562 - -
Amo02g1835 565 MobiDBLite consensus disorder prediction 477 505 - -
Amo02g1835 565 PANTHER ATP-DEPENDENT RNA HELICASE DDX55 23 562 - -
Amo02g1835 565 SMART DUF4217_3 387 450 IPR025313 -
Amo02g1835 565 CDD SF2_C_DEAD 226 358 - -
Amo02g1835 565 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 240 396 IPR001650 -
Amo02g1835 565 Pfam Helicase conserved C-terminal domain 237 349 IPR001650 -
Amo02g1835 565 Coils Coil 477 499 - -
Amo02g1835 565 MobiDBLite consensus disorder prediction 477 533 - -
Amo02g1835 565 Pfam Domain of unknown function (DUF4217) 390 447 IPR025313 -
Amo02g1835 565 Gene3D - 47 201 IPR027417 -
Amo02g1835 565 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 43 190 IPR014001 -
Amo02g1835 565 SMART helicmild6 264 349 IPR001650 -
Amo02g1835 565 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 368 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1835 Amo-Chr2 58021505 58025557 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1835 36 363 Eukaryotic Initiation Factors Gene Family AT1G72730 30.000 8.72e-40 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1835 K14809 - gmx:100801482 892.878