Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo02g1810 | ATGGTTTGGTTTCAATGCGAGGACTGCGGCGACAACCTCAAGAAGCCCAAGTTGGCTGGTCACTTCCGAAGCTGCTCCGCTTACAGGTTATCATGCATTGACTGTGGTGAAACTTTTGGCCAAGACACCGTTCAGAACCACACTCAGTGTATGACCGAAGCGGAAAAGTATGGTCCAAAGGGGCAAGTCAAGAATGGTGCACCTGCAAAGCCTAACAAGGATGGCAACAAGCAAAAGCCTGATGTTGATATCAATGTCGGTTTGTCCGAACGCCCTCCATGGTTTTGTAGTCTTTGCAATACACAAGCTACCAGCAAGCAAACACTTCTTCTCCATGCCGATGGGAAGAAACATCGGGCAAAAGCCCGAGCATACCATGCTTCTAAGCAACCACCGCCCCAGACAGACAAATCTGCACCTGATGCTAAGATTGTGTCGGAGGCTGCTCCTAATGAGGCTACAGACGGCAAAAATGCAGAGCAYCCAAAATTAGAAGAGTCTTCTAAACAAGATAATTTGAAATCAGGGGACAAAATTTCTTCAGCAAAAAAGAGGAAACTTGAAGCGTCGGAGGGTGATCTTATTAAAAAATGCAGGAATGACATTTCTGTTGACACTGGAAATGGAGAAGTTATTCAGGGTGAAGAAGCAGAAGGGAYAGTAGAATCTGCTGTCAAAAATAAAATTAAGTGGAAGAAGRTTATCAAATCAGCTCTGAAATCTCAACCTGATGGAACTTTGAAGATGAAGAAACTGAAAAAAGTTGTCCTTAAGGCACTGCAGGAATCTGGCGTCGTAGTGGATGAAACTGAGTTCAGTGAGGCACTTCAGCAGAAAATAAACTCCAGCTCTAGATTTGCTGTTGAGGGCAAGTATGTGCAATTGGTGGCCAAAGACTGA | 900 | 0.4456 | MVWFQCEDCGDNLKKPKLAGHFRSCSAYRLSCIDCGETFGQDTVQNHTQCMTEAEKYGPKGQVKNGAPAKPNKDGNKQKPDVDINVGLSERPPWFCSLCNTQATSKQTLLLHADGKKHRAKARAYHASKQPPPQTDKSAPDAKIVSEAAPNEATDGKNAEHPKLEESSKQDNLKSGDKISSAKKRKLEASEGDLIKKCRNDISVDTGNGEVIQGEEAEGXVESAVKNKIKWKKXIKSALKSQPDGTLKMKKLKKVVLKALQESGVVVDETEFSEALQQKINSSSRFAVEGKYVQLVAKD* | 300 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo02g1810 | 299 | SUPERFAMILY | beta-beta-alpha zinc fingers | 83 | 127 | IPR036236 | - | |
| Amo02g1810 | 299 | Gene3D | - | 1 | 50 | - | - | |
| Amo02g1810 | 299 | ProSiteProfiles | Zinc finger C2HC LYAR-type profile. | 27 | 51 | - | - | |
| Amo02g1810 | 299 | Pfam | LYAR-type C2HC zinc finger | 30 | 57 | IPR014898 | - | |
| Amo02g1810 | 299 | SUPERFAMILY | beta-beta-alpha zinc fingers | 30 | 58 | IPR036236 | - | |
| Amo02g1810 | 299 | SUPERFAMILY | beta-beta-alpha zinc fingers | 1 | 26 | IPR036236 | - | |
| Amo02g1810 | 299 | ProSiteProfiles | Zinc finger C2HC LYAR-type profile. | 1 | 26 | - | - | |
| Amo02g1810 | 299 | MobiDBLite | consensus disorder prediction | 110 | 185 | - | - | |
| Amo02g1810 | 299 | Pfam | Zinc-finger of C2H2 type | 94 | 118 | - | - | |
| Amo02g1810 | 299 | PANTHER | CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR | 1 | 296 | IPR039999 | GO:0003677 | |
| Amo02g1810 | 299 | Coils | Coil | 298 | 299 | - | - | |
| Amo02g1810 | 299 | MobiDBLite | consensus disorder prediction | 58 | 86 | - | - | |
| Amo02g1810 | 299 | MobiDBLite | consensus disorder prediction | 154 | 185 | - | - | |
| Amo02g1810 | 299 | Gene3D | Classic Zinc Finger | 88 | 130 | - | - | |
| Amo02g1810 | 299 | SMART | ZnF_U1_5 | 91 | 125 | IPR003604 | GO:0003676|GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo02g1810 | Amo-Chr2 | 57388782 | 57391094 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo02g1810 | 73 | 222 | C2H2 Transcription Factor Family | AT2G19380 | 40.789 | 6.67e-18 | 82.0 |