Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1800 ATGTCAAGCAGCAGGAACACTCATTGGTGTTACAGTTGCAGGAGGCCAATTCGACTGGGATGGCGAGATGCGGTTTGCCCTAGCTGTAATGAGGGATTTATTCAGGAACTTAATGATATGGTGCATGTTAACCCTCTGGAATTCTTTGGACTAGATAACAATGAAGAGCATGACCAAAGATTTGGACTTATGGAAACTTTCTCTTCCTTTATGCGGCAGCAAATGGCAGACAGAAGTCATAGCCATGATATCAGGGCACAGTCGGAATCTATTTCGGAGCATGGGGCAGGTTTTGCTCCTTTGTTGATATTTGGTGGTCAAATTCCTTTTAGATTATCTGGACATGGTGGTTTTGAGGCTCTCTTTAATGGGACTCCAGGTATTGGTCTTACACGAGGCAACACAGGTGATTATTTTATTGGTCCTGGACTTGAAGAACTGTTTGAACAGCTCTCAGCTAATACTCGCCAAGGACCTCCACCTGCATCCAGATCCTCTATAGATGCAATGCCTACTATCAAAGTTACACAGAGGCATCTTCGTTCGGATTCACATTGTCCGGTGTGCAAAGATAAATTTGAGGTAGGGACTGAAGCAAGACAAATGCCATGTAACCATATGTACCACTCGGATTGTATTGTTCCATGGTTGGTCCAGCATAACTCCTGCCCTGTTTGCCGTCAAGAATTGCCACCACAAGGATTGAGTGGTAACCAAGGCTCGAATGGCCGAAGTAGAGGTAACTTTAGTGGCAGCACCAGTGGTAGGAGTGGTAGGGAGAACCAGGGAAGGCGAAATCCGTTTTCATTTTTGTGGCGTTTCCGCAGTTCTAATTCTAGCAGCAATGATAGAGCAACCCGAAGCAGCTCACCAACACCATCATTCCCCGATAGTAGTCATCACACGGAGTATTCTGGGTGGCCATTTGAATGA 933 0.4566 MSSSRNTHWCYSCRRPIRLGWRDAVCPSCNEGFIQELNDMVHVNPLEFFGLDNNEEHDQRFGLMETFSSFMRQQMADRSHSHDIRAQSESISEHGAGFAPLLIFGGQIPFRLSGHGGFEALFNGTPGIGLTRGNTGDYFIGPGLEELFEQLSANTRQGPPPASRSSIDAMPTIKVTQRHLRSDSHCPVCKDKFEVGTEARQMPCNHMYHSDCIVPWLVQHNSCPVCRQELPPQGLSGNQGSNGRSRGNFSGSTSGRSGRENQGRRNPFSFLWRFRSSNSSSNDRATRSSSPTPSFPDSSHHTEYSGWPFE* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1800 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 291 - -
Amo02g1800 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 233 IPR013083 -
Amo02g1800 310 MobiDBLite consensus disorder prediction 234 264 - -
Amo02g1800 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 2 291 - -
Amo02g1800 310 Pfam Ring finger domain 185 227 IPR001841 -
Amo02g1800 310 CDD RING-H2_RNF126_like 186 227 - -
Amo02g1800 310 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Amo02g1800 310 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Amo02g1800 310 SMART ring_2 186 226 IPR001841 -
Amo02g1800 310 MobiDBLite consensus disorder prediction 234 310 - -
Amo02g1800 310 MobiDBLite consensus disorder prediction 271 301 - -
Amo02g1800 310 SUPERFAMILY RING/U-box 166 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1800 Amo-Chr2 57223387 57226289 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1800 121 240 C3H Transcription Factor Family AT5G01980 40.323 2.72e-27 109