Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1789 ATGGTTAATCCTCTTGGGTCTGAGATTCACAGCGCAGCAAAGGCTGCAACCACCCTCCACCGCGTCATTCTTACGAAGACGCCACCAAATCAAACCAAATTGCACTCTAATTCAAATACGCTTCTATTCTCTCTCTCGCCCCCCCAAACCCAAGTTTCCCCATTTGTTTCCAAGTTGCACTTCAAATTCATCACGCTTTTTCCATTCATCTCAAATTCTCTCCAATTTCAAACCCTAACCCTAGCCTCTCTGCAGATGAACCCCTACGATAACAGATACTCTGACGCCGCTTCTTATCGCAACCGTCGCAGCGATATCCTCGGTTCTGGACCATTCATGCCGCCTCCTGTTGTAGGTCGTGGTGCTGCGGTCCCCTACGGTGCCCCTCCGGTCCCTTATGGTGCAGGAAGAGGAGCTCCGAATGCCTTCGGGTCCTCGTCGGTAACTTCCTTTACGCCCCCTCCTGGTGGTTTCAATATAGGCCGAGGCGGTGGTGGACTTGGTAATGGCCATGCTGGTGGCAGAAAAGACGGCGGAGGTCGTTACGGTACTGGTGGAAGAGGTCGCGGAGGTACTGGTAGAAACGGCGGAACTGGTAGAGGCGGTGGAAGCGGTTTTAGGGGAGGCAGAAGTCATGGTGGTGGAAGAGGAGGAGGAGGTGGTAGACATGGTGGACGGTCATCGAAGGATGAATTGAACAAGATTTCCTTGCCAAAGCAGGATTTTAAGAATTTGGTCCCTTTTGAGAAGAATTTCTACGTTGAGTCCCCTGCAGTGAGGGCCATGTCCGATCAAGAAGTGATGCATTATCGTGCCAGTAGAGAAATAACAGTGCAAGGCCATGATGTGCCGAAACCCATTCGGATGTTCCATGAGGCCAGGTTTCCTGATTACTGCCTTGAGGTGATTGAAAACCTGGGATTTGTTGAGCCGACTCCAATCCAGGCCCAGGGTTGGCCGATGGCTCTTAAAGGCAGAGATTTGATTGGCATTGCGGAGACTGGCTCCGGCAAAACTTTGTCATATCTGCTTCCTGCTTTGGTGCATGTCAGTGCACAACCTCGACTGTCACATGGGGATGGTCCCATTGTCTTAGTTTTAGCACCAACTAGAGAGTTAGCTGTTCAAATTCAAGAAGAAGCTCAGAAATTCGCAGGACGGGCAAATATTAGAACTACATGCATCTATGGTGGTGCACCAAAGGGACCTCAAATTCGTGACCTTCAAAGGGGTGTAGAGATTGTTATTGCTACACCAGGTCGCCTTATAGATATGCTGGAAGCTCAGCACACAAACTTGCAGAGAGTTACTTACCTTGTCTTGGATGAAGCTGATAGGATGTTGGACATGGGTTTTGAACCTCAGATAAGGAAAATTGTAGGCCAGATTCGACCAGATAGACAGACGTTATATTGGAGTGCTACATGGCCAAAGGAGGTTGAAGCTCTGGCAAGGCAGTTCCTGCGCAACCCATATAAGGTAATTATTGGGTCACCGGAACTGAAAGCAAACCAATCTATAAATCAAGTTGTTGAAGTTGTGACAGATGCAGAGAAATATAACAGATTGATTAGATTGCTGAAAGAAGTGATGGATGGGAGCCGAATTCTAATATTTATGGAGACAAAAAAGGGATGTGATCAAATTACAAGACAATTGAGGATGGATGGATGGCCAGCTCTATCCATCCATGGTGATAAAAACCAGGCTGAAAGAGACTGGGTTTTGGCTGAGTTTAAGAATGGTAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAAGACATAAAATGTGTGGTCAATTATGATTTTCCTTCAAGCCTGGAAGATTATGTACACAGAATTGGTCGAACTGGTCGTGCAGGGGCTAAAGGGACTGCGCACACCTTCTTCACACATGCTAATGCTAAGTATGCGAGGGCTCTGATAAAGATTTTACAAGATGCAGGTCAGGTTGTGAGCCCTGCACTATCTGCATTGGCTAGGTCAGCTGGTTCTGCTCAATTAGGATCCGGAGGAAGCTTTCGATCAAGAGGACGTGGAGGCTTTGGCAACAGAGGTGGAAGATCAGGATCCAATACCATTCCTCTAGGTTCAAAAAGGCCTTGGCATGGTATGTAG 2139 0.4778 MVNPLGSEIHSAAKAATTLHRVILTKTPPNQTKLHSNSNTLLFSLSPPQTQVSPFVSKLHFKFITLFPFISNSLQFQTLTLASLQMNPYDNRYSDAASYRNRRSDILGSGPFMPPPVVGRGAAVPYGAPPVPYGAGRGAPNAFGSSSVTSFTPPPGGFNIGRGGGGLGNGHAGGRKDGGGRYGTGGRGRGGTGRNGGTGRGGGSGFRGGRSHGGGRGGGGGRHGGRSSKDELNKISLPKQDFKNLVPFEKNFYVESPAVRAMSDQEVMHYRASREITVQGHDVPKPIRMFHEARFPDYCLEVIENLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPALVHVSAQPRLSHGDGPIVLVLAPTRELAVQIQEEAQKFAGRANIRTTCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLYWSATWPKEVEALARQFLRNPYKVIIGSPELKANQSINQVVEVVTDAEKYNRLIRLLKEVMDGSRILIFMETKKGCDQITRQLRMDGWPALSIHGDKNQAERDWVLAEFKNGRSPIMTATDVAARGLDVKDIKCVVNYDFPSSLEDYVHRIGRTGRAGAKGTAHTFFTHANAKYARALIKILQDAGQVVSPALSALARSAGSAQLGSGGSFRSRGRGGFGNRGGRSGSNTIPLGSKRPWHGM* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1789 712 CDD DEADc_DDX5_DDX17 300 494 - -
Amo02g1789 712 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 288 316 IPR014014 GO:0003724
Amo02g1789 712 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 440 448 IPR000629 -
Amo02g1789 712 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 522 667 IPR001650 -
Amo02g1789 712 PANTHER LD32873P 157 697 - -
Amo02g1789 712 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 157 697 - -
Amo02g1789 712 SMART helicmild6 547 628 IPR001650 -
Amo02g1789 712 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 319 494 IPR014001 -
Amo02g1789 712 Gene3D - 501 671 IPR027417 -
Amo02g1789 712 SMART ultradead3 307 510 IPR014001 -
Amo02g1789 712 Pfam DEAD/DEAH box helicase 312 482 IPR011545 GO:0003676|GO:0005524
Amo02g1789 712 MobiDBLite consensus disorder prediction 672 712 - -
Amo02g1789 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 649 IPR027417 -
Amo02g1789 712 MobiDBLite consensus disorder prediction 158 236 - -
Amo02g1789 712 Pfam Helicase conserved C-terminal domain 518 628 IPR001650 -
Amo02g1789 712 CDD SF2_C_DEAD 507 637 - -
Amo02g1789 712 Gene3D - 261 500 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1789 Amo-Chr2 56270216 56274417 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1789 285 666 Eukaryotic Initiation Factors Gene Family AT3G19760 34.726 1.90e-66 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1789 K12823 - gmx:100777610 846.269