Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1777 ATGCCACCTGAGCTATTGAGGGATGTGCTCTTGAGGATTGAGGCCTCTGAAGATGCCTGGCCTGCCCGGAAACATGTCGTTGCCTGTGCCGGTGTATGCCGCAGCTGGAGGGAGATCATGAAGGAAATTGTCAAGTCCCCTCAAGTTTCCAGCAAGCTCACATTCCCAATCTCATTGAAGCAGCCTGGTCCAAGAGATTCTCTTCTCCAGTGTTATATTAAACGCAATCGTAGTAATCAAACATATTATCTGTACCTTGGTTTAAATCAAGCCTCAACTGATGATGGAAAGTTCCTTCTTGCTGCACGCAAATGTCGTCGTGCAACTCACACCGACTATATCATCTCTCTTAACTGCGACGACGTATCAAGAGGGAGTAGCACCTATATTGGAAAACTCAGATCAAACTTTCTGGGGACTAAGTTCACCATATATGATGCGCACCCTCCACTTTGTGGAGCTGCCAAAGTTACAAAGTCTCGTTCCACCAGGCTGGTTAGTCTCAAGCAAGTGTCTCCAAGAGTTCCTGCCGGCAACTATCCCATTGCACATGTTTCGTATGATCTGAATGTTTTGGGATCCAGGGGCCCTAGGATAATGCAATGTGTTATGGATGCCATCCCCGCATCGGCTGTTGAACCAGGAGGTGTAGCTCCAACACAGACTCATTTCTTCATAGCCGAATTGAAAACTTCTCCATCTATTCCCTTTTTTAGATCAAAATCAACCCGTGTCGACAATCTCCAACTGGTTCCTTCGACTACTCAAAACGAGGGAATGCTTGTGTTACGAAACAAGTCCCCTAGGTGGCATGAACAACTCCAGTGCTGGTGTTTGAACTTCAATGGACGAGTGACAGTAGCCTCGTTAAAAACTTTCAGCTGGTTGCATCACCAAAAAATGGAGTTTCTGAGCAGGCTCAGGAAAATGTTATCTACATATCCAATCTCTGCCTTCGAAGCATTTGCAATTTGCCTTAGTAGCTTTGACACCAAGATTGCTTGTGAATGA 1011 0.458 MPPELLRDVLLRIEASEDAWPARKHVVACAGVCRSWREIMKEIVKSPQVSSKLTFPISLKQPGPRDSLLQCYIKRNRSNQTYYLYLGLNQASTDDGKFLLAARKCRRATHTDYIISLNCDDVSRGSSTYIGKLRSNFLGTKFTIYDAHPPLCGAAKVTKSRSTRLVSLKQVSPRVPAGNYPIAHVSYDLNVLGSRGPRIMQCVMDAIPASAVEPGGVAPTQTHFFIAELKTSPSIPFFRSKSTRVDNLQLVPSTTQNEGMLVLRNKSPRWHEQLQCWCLNFNGRVTVASLKTFSWLHHQKMEFLSRLRKMLSTYPISAFEAFAICLSSFDTKIACE* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1777 336 Gene3D Tubby Protein; Chain A 55 336 IPR025659 -
Amo02g1777 336 PANTHER TUBBY-RELATED 1 335 - -
Amo02g1777 336 Pfam F-box domain 1 44 IPR001810 GO:0005515
Amo02g1777 336 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 1 335 - -
Amo02g1777 336 Pfam Tub family 59 331 IPR000007 -
Amo02g1777 336 ProSitePatterns Tub family signature 2. 321 336 IPR018066 -
Amo02g1777 336 SUPERFAMILY Tubby C-terminal domain-like 47 336 IPR025659 -
Amo02g1777 336 PRINTS Tubby superfamily signature 263 280 IPR000007 -
Amo02g1777 336 PRINTS Tubby superfamily signature 281 297 IPR000007 -
Amo02g1777 336 PRINTS Tubby superfamily signature 113 129 IPR000007 -
Amo02g1777 336 PRINTS Tubby superfamily signature 129 153 IPR000007 -
Amo02g1777 336 PRINTS Tubby superfamily signature 179 206 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1777 Amo-Chr2 55644295 55646770 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1777 1 336 TUB Transcription Factor Family AT2G47900 70.621 1.03e-173 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Amo02g1777 Tub 5.1e-83 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1777 K19600 - gmx:100809257 575.859