Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1766 ATGTCAAACATAACAAGTTGTGATAGTGGGAGCTTCTCAACAGAGAACACAGTTCCATTATTAGAAGATGCAGTGGTGAAACAACAATCTTCAGAGATTCTTGGTGGTAGGTTCCATCATAGTCCACATTCTCATACTTCAACAACAACAACAAATAATAAAAATAATAATAGCAATGCTTCCAACTCAAATTCTCAACCTCCTCCTCCACCTCCTAAGAAGAAAAGGAACCTACCGGGAAATCCAGATCCCAGTGCTGAAGTGATAGCTCTATCACCAACAACACTAATGGCCACAAACCGCTTCATATGCGAAATATGCAACAAAGGGTTTCAAAGAGACCAGAACCTTCAACTTCATCGGCGAGGACACAACCTGCCGTGGAAGCTGAAGCAGCGAACGAGTGCGGAGGTGAGAAAGAGAGTATATGTGTGTCCTGAGTCCTCGTGTGTTCACCACAACCCCGCGAGAGCGTTGGGTGACCTCACGGGAATCAAGAAACACTTTTGTAGGAAGCATGGTGAGAAAAAGTGGAAATGTGATAAGTGCTCAAAGAAATATGCTGTTCAATCTGACTGGAAGGCACATTCCAAAATATGCGGTACAAGGGAGTACAAATGTGACTGTGGCACCATCTTTTCCAGAAGAGATAGCTTCATCACCCACAGAGCATTCTGCGACGCACTTGCAGAAGAGAACAACAACAAGAAGAACGAAGGATCATTATTCCCAAACATACCTTCAAATCTCCAATCCCAACCACAAATCCCAAACCTCCTTCTTCCCTCTCTACCAATCAACACCACCCCCACCACTCTTTCTTCATCCTCCTCACTCCCTCTTCACCACGACCTCATCATTCCAAATCCCTCCTTCAACAACATACCCTTCCCGAGAAACCCCAACACCACCACCACCACCACCACCACCACTACTTCACATCCTTCTCTTCAACTCACCTCAACCATCTTCGATGACAACGCCCTCCACTTAACTGCGTCGTCGTCATCACTGTCCTCGCCGCACATGTCAGCCACCGCGCTGCTTCAGAAAGCAGCGCAAATGGGTGCAACCGTCAGCAGCAGCAACAACAACAACAACATGGTAGTGGAGAATAGCAACAAGGGTGGCGGTTATGTAACCGCCACAACAAGCATGGCGCCGCCATCGTTTAGCGGAGTAGCTCCAGTGCAACAGAATGTGAATAACAATAATAACAGTTTGTTCATGAACCAGTTCATGCAACAAGACATGGCTACTACTCCTCATCATTATGGTAATTTGATGTGTGGAATGAACGGTGTGGATATGTTCAACGCTATATTGGACCAAAGCAAGGCACTGTCCAAGATCATTGACCACAGTAACCACCACCGCGAAAGTGCGGTGACGAAAAGGGAGTGTACTAAGGGTGGAAGTATCGGTGGTAATAGTGATGTGATGACGTTGGACTTGTTGGGAATAGGAGGAGGCGGCGGCGGTGGACATAATGGAAGTGGTGGTTTCTATGGCGGTGGTAATAATAATAATAACCAGCAACAAGGAGATAATAATGGTGCAGCAAGTGTAAGAGATGAGGTTTGGAATTGGTCAACGAAGAACGCAGGTTTTGAATCCTTCTCAGCAACAAGCAGCATTTGA 1641 0.4619 MSNITSCDSGSFSTENTVPLLEDAVVKQQSSEILGGRFHHSPHSHTSTTTTNNKNNNSNASNSNSQPPPPPPKKKRNLPGNPDPSAEVIALSPTTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSAEVRKRVYVCPESSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNNKKNEGSLFPNIPSNLQSQPQIPNLLLPSLPINTTPTTLSSSSSLPLHHDLIIPNPSFNNIPFPRNPNTTTTTTTTTTSHPSLQLTSTIFDDNALHLTASSSSLSSPHMSATALLQKAAQMGATVSSSNNNNNMVVENSNKGGGYVTATTSMAPPSFSGVAPVQQNVNNNNNSLFMNQFMQQDMATTPHHYGNLMCGMNGVDMFNAILDQSKALSKIIDHSNHHRESAVTKRECTKGGSIGGNSDVMTLDLLGIGGGGGGGHNGSGGFYGGGNNNNNQQQGDNNGAASVRDEVWNWSTKNAGFESFSATSSI* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1766 546 MobiDBLite consensus disorder prediction 31 86 - -
Amo02g1766 546 Pfam Zinc-finger double-stranded RNA-binding 102 124 IPR022755 -
Amo02g1766 546 SMART c2h2final6 178 198 IPR013087 -
Amo02g1766 546 SMART c2h2final6 143 173 IPR013087 -
Amo02g1766 546 SMART c2h2final6 102 124 IPR013087 -
Amo02g1766 546 MobiDBLite consensus disorder prediction 296 314 - -
Amo02g1766 546 Gene3D Classic Zinc Finger 81 151 - -
Amo02g1766 546 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 124 IPR013087 -
Amo02g1766 546 SUPERFAMILY beta-beta-alpha zinc fingers 101 198 IPR036236 -
Amo02g1766 546 MobiDBLite consensus disorder prediction 292 314 - -
Amo02g1766 546 MobiDBLite consensus disorder prediction 41 63 - -
Amo02g1766 546 Gene3D Classic Zinc Finger 156 237 - -
Amo02g1766 546 MobiDBLite consensus disorder prediction 64 78 - -
Amo02g1766 546 MobiDBLite consensus disorder prediction 502 519 - -
Amo02g1766 546 MobiDBLite consensus disorder prediction 499 519 - -
Amo02g1766 546 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 47 491 - -
Amo02g1766 546 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Amo02g1766 546 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 47 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1766 Amo-Chr2 55281093 55287578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1766 48 360 IDZ Gene Family AT3G50700 55.460 1.09e-116 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo02g1766 zf-C2H2_jaz 8.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1766 - - adu:107465334 802.357