Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1765 ATGGAGCCCGAGAACGTCATCAATGCCTACAACAAGCACTCTCGCCGGTTTGGCTTCTTGGAGGCTGCTGATGTTGAAATACTGTCGCCTCTCATGGACTTGGGAGACTCCATCCTCCTCGAAGCCGTCATCCCGGCGCGGATAAACAGATCCCGCCGCTTGAGGATCACTTGCAAGATATTGATTTCCACCAGTCTCAATCTTTCCGACCAGATCACCCAATACATCCACTACTGTGGCCGCCGACTAATTGGCCCACTTGACGACGAATTTATGGAGCCTGCGGCTAAGGAAACCACTGCCCTTAAGAAATTCAAGGCAGTGGACTACAGTTTCGCAGACCTCGAGAAGAAGTTGGCTTCTGCAGAAAGCATTGTGAAGACTAGAGCACTGGAGCCTCCCGAAGGCATTGTGAGGACCAGGCTTCTGCAGCACCAGAAGGAAGGGCTGTGGTGGCTCCTTAAGAGAGAGGAATGCGAGGAGCTTCCGCCGTTTTGGGTGGAGAAAGCAGGGGGCGAGTTTTTTAACATCTTAACAGAAGAGAGTAGGTCTACAAAGCCTGAACCCTGGAAGGGGGGATCTTGGCTGATGAAACGGGGCTTGGGAAGACTCTCACTTTGCTCTCCCTTGTCGCGCTTGATAAAGTACTATGGTAACAAAAGAACAAAGGCGGCTGAGGATTTGATGAATAGAGGGGACGAGTCGCCGGTGAAGAAAGTTGCTTGGAATAGGATTATTTTGGATCAGGTGGAGGCCATAAAATTTTTAGGAGCCGGGCGAATGCAAATGGTGATGCACCTCAATACCAAGAGGAGGTGGGCTGTCACCTCCACACCCATCAAGGATGGCTACGTGGACACATTTGCATTAATGTATTTCCTGGGTTATGAACCATTCTCCAATGGAAAATATTGGAACCGGTTCATTCAGAGCCCCATAAAGCAAGGCCTCGACAGCGGCCATGAGCGCTTCGAGGTATTGATGAAGGCAATTTCGTTAAGAAGAACAAAAGACAATGAATTGTTAGGGGTGCCACCAAAAACTATTGAGACTCTATATGTTGAACTTAATGGAGAAGAACGTAAAATGTATAATTGGATAAAAGGTGAAGTGATGCTTTTAATAAGGAAGGATACCAAAAGAGTTAACATTGTGCCCAGTGATCTCGCAAACACACTCCGTTTAACTCTTGAAGATGTTTCCAATAACCCAGAGTTGTTGCAAAAGTTAGTTGTAACGCTGCAAGAATGTGAAGCTTATGAGTGCCCAATTTGCTGTTATCCTTCAGCAAACATTGTTATCACCCGCTGTACTCACATCTTCTGCCGACTCTGTATTCTGAGAATTATACAATCCAGCGGATCCCCTCATTGTCCTCTTTGCCGTGGAGCTCTATCTGAATCTGACTTGTTCTCAGCCCCAATCGAGCCATCTAGAGCTGATAGTACCTCTTCATCCTCATCATCGGATAGAGAGTTATCTTCCAAAACATCTGCGTTGATAAAATTTCTCAAAGAATCAAGAGAACAGAAGCCAACAGCAAAATTGGTTGTGTTTTCACAATTTCGCAAGGTGTTAGTGTTATTGGAAGTGCCTTTGAAGGAGGCTGGTTTCAAGACTTTGCGCATTGATGGCTTGATGACGGCTGAACAGAGGGCTGGTGTTATTGATCAATTTCAAGACACTGAAGAAAATGGACTGACCGTTCTGCTTGCAAGCCTTAGGGTTTCAGGTGCAGGTGTAAATCTCACAGCCGCCACCACGGTGTATTTCATGGAGCCATGTTGCAATGCGGCTGTTGAAGAACAGGCAATGGATCGCGTCCATTGCATTGGACAGAAAGAGGCTGTGAGGATTGTTAGATTAGTTGTTCGGGACAGCATTGAGGAAAAGATGCTGATCTTGCAGGAGAAGAGGAGGGGAAGTCATTCTAGTGCCCTGAAGTATAAAGATCTAAATTTCCCTATGTCCATAGAATGA 1980 0.4641 MEPENVINAYNKHSRRFGFLEAADVEILSPLMDLGDSILLEAVIPARINRSRRLRITCKILISTSLNLSDQITQYIHYCGRRLIGPLDDEFMEPAAKETTALKKFKAVDYSFADLEKKLASAESIVKTRALEPPEGIVRTRLLQHQKEGLWWLLKREECEELPPFWVEKAGGEFFNILTEESRSTKPEPWKGGSWLMKRGLGRLSLCSPLSRLIKYYGNKRTKAAEDLMNRGDESPVKKVAWNRIILDQVEAIKFLGAGRMQMVMHLNTKRRWAVTSTPIKDGYVDTFALMYFLGYEPFSNGKYWNRFIQSPIKQGLDSGHERFEVLMKAISLRRTKDNELLGVPPKTIETLYVELNGEERKMYNWIKGEVMLLIRKDTKRVNIVPSDLANTLRLTLEDVSNNPELLQKLVVTLQECEAYECPICCYPSANIVITRCTHIFCRLCILRIIQSSGSPHCPLCRGALSESDLFSAPIEPSRADSTSSSSSSDRELSSKTSALIKFLKESREQKPTAKLVVFSQFRKVLVLLEVPLKEAGFKTLRIDGLMTAEQRAGVIDQFQDTEENGLTVLLASLRVSGAGVNLTAATTVYFMEPCCNAAVEEQAMDRVHCIGQKEAVRIVRLVVRDSIEEKMLILQEKRRGSHSSALKYKDLNFPMSIE* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1765 659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 407 473 IPR013083 -
Amo02g1765 659 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 125 203 - -
Amo02g1765 659 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 496 653 IPR001650 -
Amo02g1765 659 Pfam SNF2-related domain 231 389 IPR000330 GO:0005524|GO:0140658
Amo02g1765 659 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 225 378 - -
Amo02g1765 659 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 125 203 - -
Amo02g1765 659 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 225 378 - -
Amo02g1765 659 ProSitePatterns Zinc finger RING-type signature. 437 446 IPR017907 -
Amo02g1765 659 Pfam Helicase conserved C-terminal domain 496 610 IPR001650 -
Amo02g1765 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 341 IPR027417 -
Amo02g1765 659 SMART helicmild6 527 612 IPR001650 -
Amo02g1765 659 SUPERFAMILY RING/U-box 405 467 - -
Amo02g1765 659 SMART ring_2 422 461 IPR001841 -
Amo02g1765 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 648 IPR027417 -
Amo02g1765 659 Pfam Zinc finger, C3HC4 type (RING finger) 422 461 IPR018957 GO:0046872
Amo02g1765 659 Gene3D - 221 336 IPR038718 -
Amo02g1765 659 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 405 648 - -
Amo02g1765 659 CDD SF2_C_SNF 496 623 - -
Amo02g1765 659 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 405 648 - -
Amo02g1765 659 Gene3D - 345 654 IPR027417 -
Amo02g1765 659 ProSiteProfiles Zinc finger RING-type profile. 422 462 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1765 Amo-Chr2 54824799 54828465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1765 212 650 RAD5 or RAD16-like Gene Family AT5G05130 45.816 2.21e-136 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo02g1765 SNF2_N 1.8e-25 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1765 K15711 - ahf:112744456 434.106