Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1706 ATGTCGCTCACGGAAAAGGGGACTGCTGCCGCCGTCACATGCCTCGCCATTACCGTCGATTTTGCCGGGAGAAGATGCGTGGAAAGAAGAGCCGTGGGTCAGGCCAGAGATCGCCGAGGGGGAGAGAGCTGCCGTTGCGTCTACTGCAGGCTCGCCATCGTCGCCATCATGGAGCACCAGGAGGCCGTCACCGGTGCGAGCTCGCGGAGGGAGAGAGGGCACAAACCCTTGTTGATTCTTTGTGAAAAGCCTCTTATGAGATTAGAAAACTTGGCCCCCTTTCTTTTTCCAGCTGAGTTAATAGAAAAAAAAAATAAAATAAGACTCAAAACACCTTCCCAGGTTATGGCCTTGGAGAAATTTTATAACGAGCACAAATATCCCATGGAGGAAATGAAACAAGATCTTGCTGAAGAGTTAGGGTTGACTAAGAAGCAAATTTCTGGATGGTTTTGCCACAAAAGGTTAAAAGATAAACGGTTGTTGAAAGATGAAGCCTTTGCTCCCATTCCCTCTTGTCATGAAAGATGA 531 0.4821 MSLTEKGTAAAVTCLAITVDFAGRRCVERRAVGQARDRRGGESCRCVYCRLAIVAIMEHQEAVTGASSRRERGHKPLLILCEKPLMRLENLAPFLFPAELIEKKNKIRLKTPSQVMALEKFYNEHKYPMEEMKQDLAEELGLTKKQISGWFCHKRLKDKRLLKDEAFAPIPSCHER* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1706 176 ProSiteProfiles 'Homeobox' domain profile. 101 161 IPR001356 GO:0003677
Amo02g1706 176 CDD homeodomain 108 160 IPR001356 GO:0003677
Amo02g1706 176 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 100 168 - -
Amo02g1706 176 Pfam Homeodomain 110 160 IPR001356 GO:0003677
Amo02g1706 176 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 100 168 - -
Amo02g1706 176 Gene3D - 99 169 - -
Amo02g1706 176 SMART HOX_1 103 165 IPR001356 GO:0003677
Amo02g1706 176 SUPERFAMILY Homeodomain-like 102 168 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1706 Amo-Chr2 52981055 52982161 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1706 101 168 Homeobox Transcription Factor Family AT4G03250 69.118 2.89e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Amo02g1706 Homeodomain 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1706 - - aip:107645585 111.309