Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1645 ATGCAAGCCTTTGACTCCAATATGAGCATCAGTGATCATTTGCAACCCCAATCAACTAATAATGTAAAACCAAACTATGTTTCAAGCCACCCCAACAATATTCAAATTCCTCAAACTCAAGCCTCTTTCTCTATGCCTCCAACATCCTCAAACTTAAGCAACCGCAAGCCCTTCTTGAAGAACATCTCAATCCCTTCAACAAGACCAGCCCTCACAATGACCTTCACACAACAAAATGAAAGAACAACCGTTAATTGCAGCAACCAAAGTTTCTCGGAAAATTGTTATCCGAACGAGGATAAGCATTATAGAGGCGTTAGGAGACGACCATGGGGGAAGTTTGCCGCAGAGATTCGCGACCCGAATCGGAAAGGATCCAGGGTGTGGCTCGGAACATTTGACACAGCCATAGAAGCTGCTAGAGCATACGATAGAGCTGCTTTCAAGATGAGAGGAAGCAAAGCTATACTGAACTTCCCTATTGAAGTTGGAGAATACTCTAAAGAATGTTCAGTTTCTTGCTCAATAATGAAGGTTGGTGGGAGGAGAGGAGAAGAGAAAATGATGAAGAGGGTAGTGAAAATGTTGTGGAGAGTAACAATAAGAAGCAAGTGA 615 0.4276 MQAFDSNMSISDHLQPQSTNNVKPNYVSSHPNNIQIPQTQASFSMPPTSSNLSNRKPFLKNISIPSTRPALTMTFTQQNERTTVNCSNQSFSENCYPNEDKHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAIEAARAYDRAAFKMRGSKAILNFPIEVGEYSKECSVSCSIMKVGGRRGEEKMMKRVVKMLWRVTIRSK* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1645 204 SUPERFAMILY DNA-binding domain 102 162 IPR016177 GO:0003677
Amo02g1645 204 CDD AP2 101 161 IPR001471 GO:0003700|GO:0006355
Amo02g1645 204 ProSiteProfiles AP2/ERF domain profile. 102 160 IPR001471 GO:0003700|GO:0006355
Amo02g1645 204 Pfam AP2 domain 102 152 IPR001471 GO:0003700|GO:0006355
Amo02g1645 204 SMART rav1_2 102 166 IPR001471 GO:0003700|GO:0006355
Amo02g1645 204 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 12 189 - -
Amo02g1645 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 12 189 - -
Amo02g1645 204 MobiDBLite consensus disorder prediction 1 33 - -
Amo02g1645 204 Gene3D AP2/ERF domain 101 163 IPR036955 GO:0003700|GO:0006355
Amo02g1645 204 PRINTS Ethylene responsive element binding protein signature 103 114 IPR001471 GO:0003700|GO:0006355
Amo02g1645 204 PRINTS Ethylene responsive element binding protein signature 126 142 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1645 Amo-Chr2 48658185 48659901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1645 48 166 AP2-EREBP Transcription Factor Family AT5G51190 57.143 3.34e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo02g1645 AP2 1.2e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1645 K09286 - gmx:100795866 184.882