Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1595 ATGCCATATACGATGATGGAAGCTTTCTCACTCTCCACCTCACACTTCGCTCCTCCTCCCTTCTCCTCCTCCACCCTTCTCGCTGGCAACTACCACCCTTCCTCCGCTATATCCTTCTCCGTCAAACCCCCGCCGGACTCAAACAATTCTGCTACTTCAACCTCCGGCAACTTCCGCCGCCCCTCCAAACCCCTTAAAACATCCAAACCTTCCTCAAACCATAAACCCCGATCAAATTCAAACCCTCTCAAGAACAAGAACCCCTTCAGTACCCCCTCCCGTTCCCTTACAGACAAGCTCTGGCTAACAAGCAAACTCTCTCCTCCTCCACCTCCTCCTCCGCCCCCTCCTCCGCCGCCCGACGAAGAAGAACAAGTCGAGGACTCGGAAATGGAGGAGGATTGCAGAGAAAGTCATGACTCGCCTGCCACGGCGGGGACTCCGTTTCGGGAGCCGGGGAAAATTTTCATCGGGAACTTGCCCGGTTGGGTCAAGAAACAAGAAATTGCGGAGTTTTTTCGGCAATTCGGGGCGATAAAGAGCGTGATATTGATCAAGGGTCACAACGACACGGAGCGGAATGCGGGATTTGCGTTTGTGAATTATGAGGGCGTGGTAGAGAAGGCTGAGAATTCGGCGATGAAAGCAGTGGAATTCGACGGTGTGGAGTTCCACGGGAGGGTCTTGACGGTGAAATTGGATGATGGGAGGAGGATGAGGGACAAGACTCGAGAGAGGGCGAGATGGTTGGAAGGGAGTGATGATAAGGATTATCGGTCCGAGTGGCACGAAGACAGGGACGGCTCGAGGAAGGAGTTCAGGAAGGTTCTGGAGACCGAGCCGGAGAATTGGCAGGCGGTTGTTCGGGCTTTCGAGAGAATCAAGAAGCCAGCTAGAAAAGAATATGGCTTGATGGTTAAATTTTATGCGAGGCGAGGGGACATGCATCATGCACGTCAAACATTTGAGAGTATGCGAGCCAGAGGAATTGAACCATCTTCTCATGTATATAGTAGTCTTATTCATGCATATGCAGTTGGAAGAGACATGGAAGAGGCTTTACTTTGTGTAAGAAAGATGAAGGAAGAGGGCATTGAAATGAGCTTAGTGACATACAGTATAATTGTGGGGGGATTTGCTAAAGTAGGCAATGCTGATGCTGCAGATCACTGGTTTAAGGAGGCCAAAGAGAGGCTTTCATCTTTAAATGCCATCATTTATGGGAACATAATTTATGCACACTGTCAAAGTAGCAATATGGATCGAGCTGAAGACTTGGTGAGGGAAATGGAAGAACAGGGCATTGATGCTCGCATCGACATATATCATACCATGATGGATGGGTATACAATGGTTGGCAATGAAAAAAAATGCTTGGTCGTGTTTGACAGACTAAAGGAATGTGGTTTCTCTCCCTCAGTTATCACCTTTGGCTGTCTCATAAATCTTTACACCAAGATAGGAAAAGTTTCTAAAGCATTGGAGATTAGCAAAATGATGAAAATGGCTGGCATAAAACATAACATGAAGACGTACTCTATGCTGATCAATGGATTCTTGAAGTTAAAAGATTGGGCTAATGCATTTGCTGTTTTCGAAGACCTTACTAAAGATGGTTTGAAACCTGATGTTGTTTTGTATAACAACATTGTAAAAGCCTTTTGTGGGATGGGTAATATGGATCGTGCCATTACTATCATTAAGCAAATGCAAAGGGAGAGGCATAGACCAACAACCCGCACATTTTTACCCATTATACATGGCTTTGCAAGAGCCGGGGAGATGAGGAGAGCCCTGGAGATTTTCGATATGATGAGGAGGAGTGGCTGCATCCCCACTGTACACACTTATAATGCTCTTATTCTTGGCCTTGTTGAGAAGCGTCAGATGGAAAAGGCTATAGGGATATTGGATGAAATGAATTTGGCAGGCGTTAACCCAAATGAGCATACCTATACAACTCTTATGCATGGTTATGCTTCACTGGGTGATACTGAAAAGGCCTTTCAGTACTTCACAAAATTGAAGAATGAGGGCTTGGAGATTGATGTATATACTTATGAGGCATTGTTGAAGGCATGTTGTAAGTCAGGCCGAATGCAGAGTGCCCTAGCAGTCACAAAAGAAATGAGTGCAAAGAAGATTCCTAGAAATACTTTTGTCTATAACATACTAATTGATGGATGGGCTCGGAGAGGCGATGTTTGGGAGGCAGCAGACCTGATACAACAAATGAGAGATGAAGGAGTGCAACCTGACATCCATACTTACACATCTTTTATAAATGCTTGCTGTAAAGCTGGTGATGTGCAGAAAGCCACACAGGTTGTTCAAGAAATGGAAACATCTGGCATAAAACCAAATCTCAAAACCTACACTACCCTAATACATGGATGGGCACGTGCCTCTTTCCCMGAAAAGGCTTTGAGATGCTTTGAAGAGATGAAGATGGCCGGATTGAAGCCAGACAAAGCAGTGTACCATTGTCTTATGACATCACTGCTATCGAGAGCCACCTTTGCTCAAGAATACATTTACAAGGGACTCTTGTCTATATGTAGAGAGATGATAGAGTCGGAGATAACCGTAGATATGGGAACTGCAGTCCACTGGTCGAGATGTTTACGAAAGATTGAGAGGACAGGAGGGGAATTAACAGAGGCCCTTGAAAAGACCTTCCCTCCAGATTGGACCTCCCATCATGTTCTTGATATCAATTGTGGAACAAAAACTGCTGAACCTGAAAGTTTTKATGATAGTCATGATGATGACAGTGGTGCTGATGACAATATATATTATGCCAATGAAGTTGATTCCGATGAGGACACKGATAATGATTATGATTGTTGA 2850 0.4512 MPYTMMEAFSLSTSHFAPPPFSSSTLLAGNYHPSSAISFSVKPPPDSNNSATSTSGNFRRPSKPLKTSKPSSNHKPRSNSNPLKNKNPFSTPSRSLTDKLWLTSKLSPPPPPPPPPPPPPDEEEQVEDSEMEEDCRESHDSPATAGTPFREPGKIFIGNLPGWVKKQEIAEFFRQFGAIKSVILIKGHNDTERNAGFAFVNYEGVVEKAENSAMKAVEFDGVEFHGRVLTVKLDDGRRMRDKTRERARWLEGSDDKDYRSEWHEDRDGSRKEFRKVLETEPENWQAVVRAFERIKKPARKEYGLMVKFYARRGDMHHARQTFESMRARGIEPSSHVYSSLIHAYAVGRDMEEALLCVRKMKEEGIEMSLVTYSIIVGGFAKVGNADAADHWFKEAKERLSSLNAIIYGNIIYAHCQSSNMDRAEDLVREMEEQGIDARIDIYHTMMDGYTMVGNEKKCLVVFDRLKECGFSPSVITFGCLINLYTKIGKVSKALEISKMMKMAGIKHNMKTYSMLINGFLKLKDWANAFAVFEDLTKDGLKPDVVLYNNIVKAFCGMGNMDRAITIIKQMQRERHRPTTRTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRQMEKAIGILDEMNLAGVNPNEHTYTTLMHGYASLGDTEKAFQYFTKLKNEGLEIDVYTYEALLKACCKSGRMQSALAVTKEMSAKKIPRNTFVYNILIDGWARRGDVWEAADLIQQMRDEGVQPDIHTYTSFINACCKAGDVQKATQVVQEMETSGIKPNLKTYTTLIHGWARASFPEKALRCFEEMKMAGLKPDKAVYHCLMTSLLSRATFAQEYIYKGLLSICREMIESEITVDMGTAVHWSRCLRKIERTGGELTEALEKTFPPDWTSHHVLDINCGTKTAEPESFXDSHDDDSGADDNIYYANEVDSDEDTDNDYDC* 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1595 949 TIGRFAM PPR: pentatricopeptide repeat domain 615 649 IPR002885 -
Amo02g1595 949 TIGRFAM PPR: pentatricopeptide repeat domain 685 718 IPR002885 -
Amo02g1595 949 TIGRFAM PPR: pentatricopeptide repeat domain 336 368 IPR002885 -
Amo02g1595 949 TIGRFAM PPR: pentatricopeptide repeat domain 511 544 IPR002885 -
Amo02g1595 949 TIGRFAM PPR: pentatricopeptide repeat domain 475 508 IPR002885 -
Amo02g1595 949 TIGRFAM PPR: pentatricopeptide repeat domain 755 788 IPR002885 -
Amo02g1595 949 TIGRFAM PPR: pentatricopeptide repeat domain 545 578 IPR002885 -
Amo02g1595 949 TIGRFAM PPR: pentatricopeptide repeat domain 581 613 IPR002885 -
Amo02g1595 949 TIGRFAM PPR: pentatricopeptide repeat domain 721 754 IPR002885 -
Amo02g1595 949 TIGRFAM PPR: pentatricopeptide repeat domain 302 333 IPR002885 -
Amo02g1595 949 TIGRFAM PPR: pentatricopeptide repeat domain 441 474 IPR002885 -
Amo02g1595 949 TIGRFAM PPR: pentatricopeptide repeat domain 650 684 IPR002885 -
Amo02g1595 949 TIGRFAM PPR: pentatricopeptide repeat domain 791 823 IPR002885 -
Amo02g1595 949 TIGRFAM PPR: pentatricopeptide repeat domain 406 435 IPR002885 -
Amo02g1595 949 Pfam Pentacotripeptide-repeat region of PRORP 694 833 IPR033443 -
Amo02g1595 949 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Amo02g1595 949 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 236 IPR000504 GO:0003723
Amo02g1595 949 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 648 682 IPR002885 -
Amo02g1595 949 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 613 647 IPR002885 -
Amo02g1595 949 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Amo02g1595 949 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 578 612 IPR002885 -
Amo02g1595 949 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 6 924 - -
Amo02g1595 949 Pfam PPR repeat 585 610 IPR002885 -
Amo02g1595 949 Pfam Pentatricopeptide repeat domain 426 485 IPR002885 -
Amo02g1595 949 Pfam Pentatricopeptide repeat domain 322 379 IPR002885 -
Amo02g1595 949 Pfam Pentatricopeptide repeat domain 498 556 IPR002885 -
Amo02g1595 949 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Amo02g1595 949 MobiDBLite consensus disorder prediction 934 949 - -
Amo02g1595 949 Gene3D Tetratricopeptide repeat domain 784 894 IPR011990 GO:0005515
Amo02g1595 949 SUPERFAMILY Formin homology 2 domain (FH2 domain) 110 120 - -
Amo02g1595 949 Gene3D Tetratricopeptide repeat domain 642 712 IPR011990 GO:0005515
Amo02g1595 949 Gene3D Tetratricopeptide repeat domain 713 783 IPR011990 GO:0005515
Amo02g1595 949 Gene3D Tetratricopeptide repeat domain 520 641 IPR011990 GO:0005515
Amo02g1595 949 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 543 577 IPR002885 -
Amo02g1595 949 Gene3D - 118 250 IPR012677 -
Amo02g1595 949 Gene3D Tetratricopeptide repeat domain 397 506 IPR011990 GO:0005515
Amo02g1595 949 Gene3D Tetratricopeptide repeat domain 267 396 IPR011990 GO:0005515
Amo02g1595 949 MobiDBLite consensus disorder prediction 913 949 - -
Amo02g1595 949 MobiDBLite consensus disorder prediction 9 102 - -
Amo02g1595 949 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Amo02g1595 949 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 753 787 IPR002885 -
Amo02g1595 949 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 229 IPR000504 GO:0003723
Amo02g1595 949 MobiDBLite consensus disorder prediction 9 152 - -
Amo02g1595 949 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 718 752 IPR002885 -
Amo02g1595 949 SUPERFAMILY RNA-binding domain, RBD 145 243 IPR035979 GO:0003676
Amo02g1595 949 MobiDBLite consensus disorder prediction 105 120 - -
Amo02g1595 949 SMART rrm1_1 154 232 IPR000504 GO:0003723
Amo02g1595 949 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 507 IPR002885 -
Amo02g1595 949 PANTHER OS04G0684500 PROTEIN 6 924 - -
Amo02g1595 949 Pfam PPR repeat family 612 660 IPR002885 -
Amo02g1595 949 Coils Coil 413 433 - -
Amo02g1595 949 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Amo02g1595 949 SUPERFAMILY TPR-like 398 775 IPR011990 GO:0005515
Amo02g1595 949 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 683 717 IPR002885 -
Amo02g1595 949 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 788 822 IPR002885 -
Amo02g1595 949 CDD RRM_SF 155 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1595 Amo-Chr2 46008160 46017774 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1595 350 842 Glycosyltransferase AT1G05670 29.150 5.43e-66 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1595 - - aprc:113870791 1443.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2463 16 104474775 104477908 Amo02g1595 02 46008160 46017774 PCT