Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1591 GTATTTACCCTTTTAAATGTATCCATTAAAACTAGCTTCATTATCTCATTTTACATTTTTTACTTATCTCAATTGGGCACAAACCCTTATTCAAAGAATCACACTCGAGTACAAGCCTTTCTGTTCTCCAAGACAGTACCCAGACACTCTGCTACCACTTTAAACAGAGAATCTTACAAAAAATGTCAAAATGCAAATTTTACACTTGCAACCCAAATACTCTCCGAGCAAAACAAAACTTTTAGGGAACGACGACGATCTGCACGGCCGCCAAAGGTGATTACGGAGGAACTGATGCTGCGCCAAGCTGGGGAAAGCTATGGCACCGCCGAGGACTCCTTCCCTATCCTTAGCGGCGGACAGAACAGTGGAAGTATGTGTTCGCTGGGGGGAAGGGAAAGATCTCTGATCCCGCGCAACGCTCCAGTTTCCGTTGCCACCACCGATCCAGAGAAAGAGAAGAACAACTCAAGCATGGCACAAACGCTAGCAATGCCCGTATCTCCCTCCCTCGCCCTAATCTCAAACCCTAAACCTCTTTCGAGAACCGTCTCCTTCCCCGTTCTCAACCCTCCCAAGGTGAGAGGGTTAAGCATAGAGTGCGCTCGTGTTGGCGGAGTGGAAATTCCGAACAACAAGAGGATCGAGTTCTCGTTACAGTACATCCATGGAATCGGGAGAAGCAGAGCTCGCAAGATTCTCTGCGATATTAGCATGGACAACAAGGTCACTAAGGATCTCAGCGAAGAGGAACTCATCACTCTTAGGGATGAAGTCTCCAAATACGTCATTGAAGGCGATTTGAGGAGGTTTAATGCGTTGAATATAAGGAGACTGAAGGAGATTCAGTGCTACCGAGGAATAAGGCATATTCAGGGTCTTCCTTGCCGAGGACAACGTACAAAGAACAATTGCAGGACCTTGAAGGGTAAGAAGGTTGCTATTGCTGGCAAGAAGAAGAAGTGA 966 0.4658 VFTLLNVSIKTSFIISFYIFYLSQLGTNPYSKNHTRVQAFLFSKTVPRHSATTLNRESYKKCQNANFTLATQILSEQNKTFRERRRSARPPKVITEELMLRQAGESYGTAEDSFPILSGGQNSGSMCSLGGRERSLIPRNAPVSVATTDPEKEKNNSSMAQTLAMPVSPSLALISNPKPLSRTVSFPVLNPPKVRGLSIECARVGGVEIPNNKRIEFSLQYIHGIGRSRARKILCDISMDNKVTKDLSEEELITLRDEVSKYVIEGDLRRFNALNIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKK* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1591 321 Gene3D - 202 270 - -
Amo02g1591 321 ProSiteProfiles Ribosomal protein S13 family profile. 204 310 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Amo02g1591 321 TIGRFAM uS13_bact: ribosomal protein uS13 203 312 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Amo02g1591 321 Hamap 30S ribosomal protein S13 [rpsM]. 201 317 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Amo02g1591 321 ProSitePatterns Ribosomal protein S13 signature. 286 299 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Amo02g1591 321 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 147 320 - -
Amo02g1591 321 Pfam Ribosomal protein S13/S18 203 307 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Amo02g1591 321 SUPERFAMILY S13-like H2TH domain 202 313 IPR010979 GO:0003676
Amo02g1591 321 Gene3D 30s ribosomal protein s13, domain 2 271 321 IPR027437 -
Amo02g1591 321 PANTHER 37S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIAL 147 320 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1591 Amo-Chr2 45924950 45928985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1591 203 319 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 32.867 1.18e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1591 K02952 - gmx:100499902 258.07