Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1590 GCGTGCTTGGATGAGGAAGTAATGGACCATTTCGAGAGTTCATTGTTTTTGCAAGATAAAGATGTGTGTGCCGACAATGATCCTTTGGCATGGGAGGACATTAAGGGTTGTCGTGTTTCAGAAAATTATGCCGAGGAAGTGCACGGTGTTGATTGTAATGTCGATGAATTTTTTGGTGACACCTTCTATGACAACTGGGATGAAAGAGCAGTTGATGATTTTGATGATTTTGGGTATATGAATCTGAAAGAAATAACTGCAAGTGAGTTTAGGTTGTTACATTTTTGGGATCGGACTGTTGCATTTTCTTTCTACCAACTGTATTCAAAGATGAACGGTTTTGCTGTTAGAAAGAATAGGATTAGCAGGAATGTAAAAAACGAGGTGACACAGCAACAATTTGTTTGCTTTAGGGAGGGGTTTATAGATCCGGGGTCTGAGAATGATTCCCATCGACGCAAACGCGAGCCGAAGCCTGAGACTAGATGTGGATATCTGGCTGAAATATGTGTTCATGTACATGTCAAAAGTGGTAGATCGATCACTTCGTACTTTCAGGATGAGCACAACCATGACATGCTTGATGATATATTGACCTTTATGCTTCCCGGGCATAGGAACAGGAATGATGCTGCCATCGATCAAATGAATCTAATGATAAAAAGTCCACTATATGCATTGGCAAGATCTGTCGCCAACACACTGACAAGAGAGATTTTCATGTTATTCAGGCTAATGTTGTCAAGAGCTTGTACGCTAAAGGTGCGTTCATGTACATTGACACCAAGTTGTGAGATTTATACACTGTCCAGGTCAAAAAATCCTAATAAAGAATGGAACGTGTCTCACTATCGGGACAGATCAATATTTAAGTGTTGTTGTTTCAGGATGGAATCATTTGGCATACCTTGTGATCATATCGTGGCAGTTCTAGTATATTTTGATGCGGAAGAGATACCAAAGAGTCTTCTTATAGATCGATGGTCGAAGAATGCTCGGTCAAAAGTGTGGGAATTTATGGAAAAGGGACCCTTTTGCTGGGAATCGATGAGAATGTGTCGTAATTGGATGTTAAACGATCTGTGCAGGGAGATTTGTGCTCTTGCATCTTCTGGTGAAGCCAAATTTAATGAGCTAAGGGATAAATTTGCAATGAGTTACTGA 1164 0.4038 ACLDEEVMDHFESSLFLQDKDVCADNDPLAWEDIKGCRVSENYAEEVHGVDCNVDEFFGDTFYDNWDERAVDDFDDFGYMNLKEITASEFRLLHFWDRTVAFSFYQLYSKMNGFAVRKNRISRNVKNEVTQQQFVCFREGFIDPGSENDSHRRKREPKPETRCGYLAEICVHVHVKSGRSITSYFQDEHNHDMLDDILTFMLPGHRNRNDAAIDQMNLMIKSPLYALARSVANTLTREIFMLFRLMLSRACTLKVRSCTLTPSCEIYTLSRSKNPNKEWNVSHYRDRSIFKCCCFRMESFGIPCDHIVAVLVYFDAEEIPKSLLIDRWSKNARSKVWEFMEKGPFCWESMRMCRNWMLNDLCREICALASSGEAKFNELRDKFAMSY* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1590 387 ProSiteProfiles Zinc finger SWIM-type profile. 267 315 IPR007527 GO:0008270
Amo02g1590 387 Pfam FAR1 DNA-binding domain 103 194 IPR004330 -
Amo02g1590 387 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 88 223 - -
Amo02g1590 387 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 88 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1590 Amo-Chr2 45911546 45913587 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo02g1590 FAR1 9e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1590 - - ahf:112705003 356.681