Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1537 ATGGCCGCAGCAGCAGCTCGACCCCTTGTCACCGTCCAACCCTTGGATGGCGACATGGCCACCGATGCCCAACCAACTGTCCCACTTCCCGATGTCATGAAGGCCGCCATTCGCCCTGACATCGTCACATTCGTCCACGACAACATTTCCAAGAACTCCCGCCAGCCCTAYGCCGTCTCCCGCCGCGCCGGCCACCARACCTCCGCCGAGTCCTGGGGAACCGGGCGTGCTGTCTCCCGTATCCCCCGTGTTCCCGGCGGCGGAACTCACCGTGCTGGCCAGGGAGCCTTCGGAAACATGTGCCGCGGCGGGCGCATGTTCGCCCCTACCAAGATCTGGCGCCGCTGGCACCGCAAGATCAACGTCAACCAGAAGCGGTACGCCGTCGTTTCCGCCATYGCKGCCTCTGCCATTCCCTCACTAGTCGTCGCACGCGGCCACCGCATTGACACCGTGCCGGAGCTCCCTCTCGTCGTCTCAGATGCCGCGGAAGCCGTTGAAAAGACAAAGGAAGCGATCAACGTCTTGAAATCCATCGGAGCTTATTCCGACGCTGAGAAGGCAAAGGACAGCCACGCAATTCGCCCTGGKAAGGGGAAAATGCGTAACCGCCGATACATTTCAAGAAAGGGACCTCTGATTGTGTACGGAACCGAAGGAGCTAAGGCTGTTAAGGCGTTCCGGAACATTCCTGGCGTCGAAGTTGYGAACGTTGAGAGACTGAATTTATTGAAATTGGCGCCTGGTGGACACCTTGGGAGGTTTGTAATATGGACTAAGTCGGCATTCGAGAAGCTTGATTCGATTTATGGTTCGTTTGAGAAGCCGTCTGAGAAGAAGAAGGGGTACTTGCTTCCTAGGGCGAAGATGGTGAATGCAGATTTGGCTAGGATTATTAACTCTGATGAGGTGCAGAGTGTTGTAAGGCCGATCAAGAAGGAGGTTAAGAGGGCTACATTGAAGAAGAACCCTCTGAAGAACCTGAATGTCATGTTGAGGTTGAACCCTTATGCTAAGGCTGCTAAGAGGATGGCACTTCTTGCSGAGGCGCAACGCGTTAAGGCCAAGAAGGAGAAGCTTGACCAGAAGAGGAAGACTGTTTCCAAGGAGGAAGCTTCTGCCATCAGGGCCGCTGGAAAGGCATGGTATCAAACTATGGTTTCAGATTCTGATTACACTGAATTTGATAACTTCTCTAAGTGGTTGGGTGTTTCACAGTGA 1221 0.543 MAAAAARPLVTVQPLDGDMATDAQPTVPLPDVMKAAIRPDIVTFVHDNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSLVVARGHRIDTVPELPLVVSDAAEAVEKTKEAINVLKSIGAYSDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEVXNVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYLLPRAKMVNADLARIINSDEVQSVVRPIKKEVKRATLKKNPLKNLNVMLRLNPYAKAAKRMALLAEAQRVKAKKEKLDQKRKTVSKEEASAIRAAGKAWYQTMVSDSDYTEFDNFSKWLGVSQ* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1537 406 Pfam 60S ribosomal protein L4 C-terminal domain 281 353 IPR025755 -
Amo02g1537 406 SUPERFAMILY Ribosomal protein L4 13 268 IPR023574 GO:0003735|GO:0005840|GO:0006412
Amo02g1537 406 Pfam Ribosomal protein L4/L1 family 27 267 IPR002136 GO:0003735|GO:0005840|GO:0006412
Amo02g1537 406 PANTHER BNAC03G35890D PROTEIN 3 406 - -
Amo02g1537 406 PANTHER 60S RIBOSOMAL PROTEIN L4 3 406 IPR045240 -
Amo02g1537 406 Coils Coil 343 370 - -
Amo02g1537 406 ProSitePatterns Ribosomal protein L1e signature. 121 147 IPR013000 -
Amo02g1537 406 Gene3D - 4 309 IPR023574 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1537 Amo-Chr2 40871165 40873673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1537 1 406 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 83.498 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1537 K02930 - gmx:100779764 734.947