Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1505 ATGCATAGCATTTTATTTTTTCTAGCGATGTTGTTCACATTGCTTCTATGTAACACACTGCAGGAGGAGATTTCAAGCCCAATCAACGCCCGAATCTTCGAACTCTGCGACGCCGAGTTGTTCCCGGAGGCGGGTCTTCAGAGCTCTGACGTTACCTCAACCTCAAACTGTTGCTTTGAAGAGGCACAATACAAGACCAATACAGTCACCACACCAACTAGTACAACACAAGATATAACTGCCTCGGCAGCGGCCGTTGCGGCCAATAACAATAACAACAAACCACCGGACAGCTGTAACAACCTTTCGGTTATCTTTGACTCCCAAGAAGACCTTGACAATGACATCTCTGCTTCCATAGACTTCTCTTCTTCTCCAGCCGCAGCTTTTCCGGTTCCATCTCTTCTCCCAAATATCACAACTCAGCCGGAACAATTCGACTTCTCTTCGCCTTCGGTTCTCAAGGGTCTCCCTCATCAGTATCCAACTGACACTGCTACTACTGTTGTTGTTCCACCACTTATGGGGAATCCATTAGTATCTTCTGTTTTCGAAGATGAATGCATGTCTTCAATGGCTTCTTATGTTCCTATTAACTCTTCTTCCGCACCTTCTTGCTCTTATCTCAGCCCTGCTGGCTTAGGAGTGTTCATGCCTCCTCTTACTACCGCCTTATCTGCTGATTCTGCCTTGTTTGGTGGCAACATTCTACTCGGTTCGGAACTTCAAGCTCAAGAAATCGATTACCAGGGAGAAAATGGTGGAATATTTTGTACAGATTCAATTCAGAGGGTGTTTAATCCACCAGATCTTCAGACACTTAGTAGTGAGAGTCAGCAACTTGTACCTGGTTCTGGAGGCTCTGCCACTTTGGCACCAGAAATCTCAAACTTGGAGGACTCTACCTTAAAAGTTGGTAAACTTTCTGTTGAGCAAAGGAAGGAAAAGATTCATAGATACATGAAGAAGAGAAATGAAAGAAATTTCAGCAAGAAAATCAAGTATGCATGCCGCAAAACTCTGGCTGATAGCCGACCCCGAGTTCGAGGAAGGTTTGCAAAGAATGATGACTTCGGAGAGAACCATAGACCAGCTTGTAGCAATCATGAAGAAGATGATGAAGAAGAAATAGTTGTGAAGGAAGATGATGGTTTGGTCGATTCCTCAGATATCTTTGCACATATAAGTGGTGTGAACTCCTTCAAGTGCAACTATTCTTCCATCCAATCCTGGATTTAA 1239 0.4407 MHSILFFLAMLFTLLLCNTLQEEISSPINARIFELCDAELFPEAGLQSSDVTSTSNCCFEEAQYKTNTVTTPTSTTQDITASAAAVAANNNNNKPPDSCNNLSVIFDSQEDLDNDISASIDFSSSPAAAFPVPSLLPNITTQPEQFDFSSPSVLKGLPHQYPTDTATTVVVPPLMGNPLVSSVFEDECMSSMASYVPINSSSAPSCSYLSPAGLGVFMPPLTTALSADSALFGGNILLGSELQAQEIDYQGENGGIFCTDSIQRVFNPPDLQTLSSESQQLVPGSGGSATLAPEISNLEDSTLKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGENHRPACSNHEEDDEEEIVVKEDDGLVDSSDIFAHISGVNSFKCNYSSIQSWI* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1505 412 ProSiteProfiles CCT domain profile. 313 355 IPR010402 GO:0005515
Amo02g1505 412 PANTHER CCT MOTIF FAMILY PROTEIN 21 412 - -
Amo02g1505 412 MobiDBLite consensus disorder prediction 352 374 - -
Amo02g1505 412 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 21 412 - -
Amo02g1505 412 Pfam CCT motif 313 355 IPR010402 GO:0005515
Amo02g1505 412 MobiDBLite consensus disorder prediction 352 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1505 Amo-Chr2 38171288 38174954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1505 292 362 C2C2-CO-like Transcription Factor Family AT5G24930 39.437 1.74e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo02g1505 CCT 5.4e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1505 - - lja:Lj6g3v0082150.1 466.848