Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1446 ATGGCTCTAGAAGCTCTGAATTCGCCTACGGCGAACTCTTTCGAAAACAGCCACAACCACGGCCACAGCCAGTTTGAATCTTGGACTAAAAGAAAGCGCTCAAGGCGAGGATCTTCTCAACCTCGCTTTGACCACCACAATCCGCCGTGCACGGAGGAAGAGTATCTCGCTCTATGCCTCATCATGCTTGCTCGCGGACACGCTGGACCTGGAACCGCCGCCGTTCTTCCTCCGCCGCAACTCACCGCCGGAGATTCTTCAACCGCGGCAAAACTCAGCTACAAATGCTCCGTCTGCAACAAGGCTTTTCCATCTTACCAAGCTCTCGGCGGACACAAGGCGAGTCACCGGAAAAACACTGCCGCCGCCGGCGGAGGAGATGATAACTCTACGTCTTCAGCAGCCACCACTAGCTCCGCCACCGCTGGCGCCGCCGTGTCCGGCGGCGGTTCAGGGAAGGCGCACGAGTGCTCAATTTGTCACAAGAGTTTCCCGACGGGACAGGCGTTAGGCGGACACAAGAGGTGCCACTACGACGGCGGCGCGGCAGGGAGTGCAGGCGGTGTTACGACGGAAGAAGGTGTGGGATCTACTCACACCGCCTTTAGCCACCGCGACTTCGACCTTAACGTTCCGGCGTACGGTGAATTCTCGAGGGATGAAGAAGTAGAGAGCCCTCACCCTGTGATGAAGAAGAGGCCACGTGTTTTCATGGTGCAGAAGATCGAAATCCCTCAAATCCGTTAG 747 0.573 MALEALNSPTANSFENSHNHGHSQFESWTKRKRSRRGSSQPRFDHHNPPCTEEEYLALCLIMLARGHAGPGTAAVLPPPQLTAGDSSTAAKLSYKCSVCNKAFPSYQALGGHKASHRKNTAAAGGGDDNSTSSAATTSSATAGAAVSGGGSGKAHECSICHKSFPTGQALGGHKRCHYDGGAAGSAGGVTTEEGVGSTHTAFSHRDFDLNVPAYGEFSRDEEVESPHPVMKKRPRVFMVQKIEIPQIR* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1446 248 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Amo02g1446 248 ProSitePatterns Zinc finger C2H2 type domain signature. 157 177 IPR013087 -
Amo02g1446 248 MobiDBLite consensus disorder prediction 1 47 - -
Amo02g1446 248 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 236 IPR044653 GO:0003700
Amo02g1446 248 MobiDBLite consensus disorder prediction 124 145 - -
Amo02g1446 248 PANTHER ZINC FINGER PROTEIN ZAT10 1 236 - -
Amo02g1446 248 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 177 IPR013087 -
Amo02g1446 248 MobiDBLite consensus disorder prediction 1 23 - -
Amo02g1446 248 Gene3D Classic Zinc Finger 92 177 - -
Amo02g1446 248 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Amo02g1446 248 MobiDBLite consensus disorder prediction 117 147 - -
Amo02g1446 248 Pfam C2H2-type zinc finger 94 118 - -
Amo02g1446 248 Pfam C2H2-type zinc finger 154 179 - -
Amo02g1446 248 SUPERFAMILY beta-beta-alpha zinc fingers 94 177 IPR036236 -
Amo02g1446 248 SMART c2h2final6 94 116 IPR013087 -
Amo02g1446 248 SMART c2h2final6 155 177 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1446 Amo-Chr2 36089148 36090508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1446 1 244 C2H2 Transcription Factor Family AT1G27730 51.953 1.76e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo02g1446 zf-C2H2_6 5.2e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1446 - - jre:109014213 239.965