Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1440 ATGAAAATCAGACTAAGGAGGTGCCCAATTCATAAGATTGCAGGTGCACCAACTGGAAATGTGGGTGCAGATACAGGTTTATGTGATCAACATGGTTTTGCAAATGCTTCTGCTGAAGAGTGTAATGAATCAGAACAGAGTTTGGATGAAGGAGCATCAGATCATGTCACCAAGTTTCATTTGCCTAGCCCCAAGAAATGGAAAATCTCTCCATTGAGAAAATATGAACCACAAGACATAATAATAAGGAGGAAAAAGAAAAGATGGAGTGAGTTCGAAGAAATAACACTGAGGGCTGCTGTGAATCAGTATGGTGAAGGAAACTGGAAGTTAATCCTTAGTACTCACATGGATGTATTTGAAGAGAGAACTGATGTTGATTTGAAGGATAAATGGAGAAACCTCAAGCATCATCGAGCTAATTAG 426 0.392 MKIRLRRCPIHKIAGAPTGNVGADTGLCDQHGFANASAEECNESEQSLDEGASDHVTKFHLPSPKKWKISPLRKYEPQDIIIRRKKKRWSEFEEITLRAAVNQYGEGNWKLILSTHMDVFEERTDVDLKDKWRNLKHHRAN* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1440 141 SMART sant 85 138 IPR001005 -
Amo02g1440 141 SUPERFAMILY Homeodomain-like 83 137 IPR009057 -
Amo02g1440 141 Pfam Myb-like DNA-binding domain 86 136 IPR001005 -
Amo02g1440 141 PANTHER MYB TRANSCRIPTION FACTOR 35 138 - -
Amo02g1440 141 PANTHER MYB TRANSCRIPTION FACTOR 35 138 - -
Amo02g1440 141 CDD SANT_TRF 87 137 - -
Amo02g1440 141 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 140 IPR017930 -
Amo02g1440 141 Gene3D - 80 139 - -
Amo02g1440 141 ProSiteProfiles Myb-like domain profile. 81 136 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1440 Amo-Chr2 35864014 35865941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1440 9 135 Single Myb Histone (SMH) Gene Family AT1G15720 33.858 1.38e-12 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo02g1440 Myb_DNA-binding 4.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1440 - K11111 adu:107474354 269.626