Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1388 ATGAGTAAGCTTCAGAGTGATGCACTGAGAGAAGCAATCACTGGGATAGTGGCTGATTCCAAAGAGAAGAATAGGAAGTTTGTGGAGACCATTGGGCTCCAAATTGGACTCAAAAACTATGACCCACAAAAGGATAAGCGTTTCAGCGGTTCTGTAAAGTTGCCACACATCCCAAGGCCCAAGATGAAAATAGAGAAAATGGGATTGGATTGGATGGACAAATTGGTGAAGAAACTTGCCAAGAAATATCATGCTTTCTTGGCTTCTGAAGCAGTCATTAAGCAGATTCCTCGTCTCTTGGGTCCTGGAAAGTTTCCCACACTTGTTACCCACCAAGAATCCCTCGAGTCTAAAGTCAATGAGACCAAGGCTATGGTGAAATTTCAGCTTAAGAAGGTGCTCTGCATGGGAGTAGCTGTAGGCAATGTAAGCATGGAGGAAAAGCAAATCTTCCATAACGTACAACTGAGCGTTAACTTCCTTGTGTCCTTGTTGAAAAAGAACTGGCAGAATGTTAGGTGCTTGTATCTGAAGAGTACCATGAGAAAATCCTACCGTGTCTTTTGA 567 0.4303 MSKLQSDALREAITGIVADSKEKNRKFVETIGLQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKIEKMGLDWMDKLVKKLAKKYHAFLASEAVIKQIPRLLGPGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFHNVQLSVNFLVSLLKKNWQNVRCLYLKSTMRKSYRVF* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1388 188 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 1 74 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Amo02g1388 188 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 66 188 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Amo02g1388 188 Gene3D - 108 186 - -
Amo02g1388 188 Gene3D - 1 98 - -
Amo02g1388 188 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 186 - -
Amo02g1388 188 PANTHER 60S RIBOSOMAL PROTEIN L10A-3 2 186 - -
Amo02g1388 188 SUPERFAMILY Ribosomal protein L1 3 188 IPR023674 -
Amo02g1388 188 Pfam Ribosomal protein L1p/L10e family 75 181 IPR028364 -
Amo02g1388 188 CDD Ribosomal_L1 9 187 IPR028364 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1388 Amo-Chr2 32240042 32242228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1388 1 188 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 75.926 3.03e-103 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1388 K02865 - gmx:100808580 333.569