Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1366 ATGGAGAAGACAAAATTGTTTCAAGCACCGATAGAACCAGAGGCGCCCCTTGTTTCAAAGAGGAGGGCGGATATCATCATCTACATCGAGAAAGCTGTATGCTTTGGAAGAAGCTTGAACAGTTTAGGAAGGGCGAAACTGATTGCAAAAGAGGGAAAATTGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCAAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGATCATCCCCATGGGGGTGGTGAAGGGAGGGCGACAATTGGTAGAAAAAAACCCGCAACTCCTTGGGGTTATCCTACACTTGGAAGAAGAGTAGAGAAAAAGATTACATATAGTAATAATTTGATTCTTTGTCACCGTTGTAAATAG 429 0.4359 MEKTKLFQAPIEPEAPLVSKRRADIIIYIEKAVCFGRSLNSLGRAKLIAKEGKLATLKLPSGEVRLISKNCSATVGQVGNVGRPVVRGVVMNPVDHPHGGGEGRATIGRKKPATPWGYPTLGRRVEKKITYSNNLILCHRCK* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1366 142 PANTHER 39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL 45 136 - -
Amo02g1366 142 SMART Ribosomal_L2_C_2 11 119 IPR022669 GO:0003735|GO:0005840|GO:0006412
Amo02g1366 142 ProSitePatterns Ribosomal protein L2 signature. 84 95 IPR022671 GO:0003735|GO:0005840|GO:0006412
Amo02g1366 142 Gene3D Ribosomal protein L2, domain 3 74 142 IPR014726 -
Amo02g1366 142 Pfam Ribosomal Proteins L2, C-terminal domain 83 117 IPR022669 GO:0003735|GO:0005840|GO:0006412
Amo02g1366 142 SUPERFAMILY Translation proteins SH3-like domain 44 137 IPR008991 -
Amo02g1366 142 Gene3D - 25 73 IPR014722 -
Amo02g1366 142 PANTHER RIBOSOMAL PROTEIN L2 45 136 IPR002171 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1366 Amo-Chr2 31277553 31280950 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1366 51 113 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 36.667 3.78e-09 51.6