Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1353 TTGGCAGAAGATGTTCCAACAAATCTTGTACCTTCCAAGCGTTCATCAAAGAGGAGCAGAGCAGTAGAATGGCTTTTGTGGTACTTGGTTTCGATTTCATTCAAACTTATGGTAGTTTTCCTTGTTGAGCAGAGAAGAAGGAGAAGGATCAATGAAAAAATGAAGGCCTTGCAACATCTAATTCTGAATTCTATCCGGTCGGCTAAGATGAAGCTAGCAAACCTTTGTATATACAAGCTTGAATTGGAGCAAAAGAGATTAAAGGAGGATCTTAAACTCTCACCAGCATACCAGAAGATGCTTAAAGTTGGGGCTTGCTGGACAAGGCAAAATCTCGTGAACGGGTAG 348 0.4109 LAEDVPTNLVPSKRSSKRSRAVEWLLWYLVSISFKLMVVFLVEQRRRRRINEKMKALQHLILNSIRSAKMKLANLCIYKLELEQKRLKEDLKLSPAYQKMLKVGACWTRQNLVNG* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1353 115 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 40 97 IPR036638 GO:0046983
Amo02g1353 115 Gene3D - 40 102 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1353 Amo-Chr2 30522312 30523350 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1353 41 95 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 40.000 1.06e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1353 - - vvi:100245419 62.3882