Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1328 ATGGAAGAAGCAACAACATCTTCAACATCATCAACAATCATGGCAGCACTCTCCACTCTCTCTCCCACCACCGTCTCCAATCTCACCCACTCCATCATCTCCGCCACCAACCACCGCACCCACCGCCTCGCCCTCCTCCTCTCCTCCCCAACCCTCTTCTCTCTAACCCTCCACCATCTCCATACCCTCTCTCTCCACCAAAAAACCCTCCTCATCGCGCGCCACCTCCTCTCTTCTCTCCACACACTCACTCGCCACGCCGCAATGCCGCCGCCATTGTCAACTTCAATGCGGCAACGCGATCTCGACGCGGTTCTCCTCCTTCTCTTGTTCTGCGAGACGCACAACCACAACCCCGAGCTTTTAGAAGATTCCTTTTCGGAATGGAGGGTGAATTTGAGAAGGGCTTTCCGGGAGAAAATATTGGCGGCCGTTTCTTTTTGTGGCGGTTTTGGATTACCAAGTATTGGGGAGTGTAACGGAACGATCTTGATCCCTTATGTGGAAACGGTGGTTCGGTGCATGGGGCTGGTGGGGTCCATGGGATGTTGTGTAGGGAGAGGGAATAATAAGGAGGAGGTGGAGGTGGCGGCAGCGGCGGCGGCGGTAGTGGCTTTGCCGGCGGTGGAAGTGGCGGTTGGAGGAAAAGAGTGCGTGATTTGCAAAGAAGAGATGCGCGTGGGGAGGGACGTCTGCGAGTTGCCATGTCAGCATTTGTTTCATTGGATGTGCATTTTGCCGTGGCTTGGAAAGAGGAACACGTGTCCCTGCTGCCGGCTCAGGTTGCCGTCCGATGATGTCTTCGGAGAGATCCAACGGCTGTGGGGTGTTTTGGTTAAGATGGGTGGAAAAGAATGTGGAGGCGGTTAA 870 0.5506 MEEATTSSTSSTIMAALSTLSPTTVSNLTHSIISATNHRTHRLALLLSSPTLFSLTLHHLHTLSLHQKTLLIARHLLSSLHTLTRHAAMPPPLSTSMRQRDLDAVLLLLLFCETHNHNPELLEDSFSEWRVNLRRAFREKILAAVSFCGGFGLPSIGECNGTILIPYVETVVRCMGLVGSMGCCVGRGNNKEEVEVAAAAAAVVALPAVEVAVGGKECVICKEEMRVGRDVCELPCQHLFHWMCILPWLGKRNTCPCCRLRLPSDDVFGEIQRLWGVLVKMGGKECGGG* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1328 289 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 283 - -
Amo02g1328 289 ProSiteProfiles Zinc finger RING-type profile. 218 259 IPR001841 -
Amo02g1328 289 SUPERFAMILY RING/U-box 214 264 - -
Amo02g1328 289 Pfam Ring finger domain 216 259 IPR001841 -
Amo02g1328 289 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 8 283 - -
Amo02g1328 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 265 IPR013083 -
Amo02g1328 289 SMART ring_2 218 258 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1328 Amo-Chr2 29425736 29427518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1328 1 280 C3H Transcription Factor Family AT5G02750 49.653 1.94e-78 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1328 - - pvu:PHAVU_007G161400g 300.441