Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1325 GGTTCCACCACAGGTAAGGTTCGTTCATCTTCCGCAGAACCATGGCCCCAGCTAAAGAAGGCTGATCCAAAGGCTCAGGCCTTGAAAACTGCTAAGGTAGTGAAGTCAGGTGCTACCTTTAAGAAGAAGGCCAAGAAGATCAGAACAAAGGTCACATTCCATCGCCCTAAGACTTTGAAGAAGGATAGGAACCCCAAATACCCCCGCATTAGTGCCCCACCAAGGAACAAGCTTGACCATTATCAAATTCTGAAATACCCTCTCACAACCGAGTCGGCAATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTTGACTTGCGTGCTGACAAGAAGAAGATCAAGGATGCATCTTTAGGCACGAAAAAAGGAGAAAAAATTATATATAGAATCGCAAATAATCGTGAAAGAAGAATGAGACTTAGATCAAGTTAG 441 0.4308 GSTTGKVRSSSAEPWPQLKKADPKAQALKTAKVVKSGATFKKKAKKIRTKVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDASLGTKKGEKIIYRIANNRERRMRLRSS* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1325 146 PANTHER 60S RIBOSOMAL PROTEIN L23A 17 120 IPR013025 GO:0003735|GO:0005840|GO:0006412
Amo02g1325 146 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 80 119 IPR012678 GO:0003735|GO:0005840|GO:0006412
Amo02g1325 146 Pfam Ribosomal protein L23, N-terminal domain 24 73 IPR005633 -
Amo02g1325 146 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 17 120 - -
Amo02g1325 146 MobiDBLite consensus disorder prediction 1 26 - -
Amo02g1325 146 Gene3D - 44 121 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1325 Amo-Chr2 29249544 29251986 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1325 36 112 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 87.013 3.29e-39 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1325 K02893 - gmx:100785534 192.971