Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1296 ATGTCCATAAATGAGGATGATGTGAAGAATGATTCTGATAATAATTTGGGTGATGATTTCGATTATCAACCGAATACAGAAGATGATGCTGAAGACGACGATGTGGATTCGCTGGATTCTACTAGCAAGAGTAAAGAAGTTTGTGGTGTAAAAAGAATAGCAGATTTAATGGTGGAGGATATTTGGAACCTGGAGTTTAGGACAGAGGATGAGGCTTGCCAATTTTATAACGCTTATTCTTGTTGGCATGGATTTGTAATTAGGAAGGACGACGTGGTTAGGGATAATCAAGGTAGAATCATTAGCAGGCAACTTGTTTGCAATAAAGAAGGGTGGAGGAATATGAGGTATCTTGATCTGGATGATAGATCAAGGGAGGCAAGGTCACTAACGCGAACCAAGTGTCCAGCTCGGCTTAGGACGTACAAAACTCGTGCGATGTGGTCCCATTGTTTCCTCCGGGATAAGTTTTTCGGTTACATAAGGATGACATCACAGTGCGAAGGTATAAATTCTCTCATCAGATTTTATGTTAATCGCAAGAACACCCTCATTGACTTCATGCATAACCTGGATAGGGCCTTAAAGGAGTATAGAAACAACGAATTAATAGCTGACTTTAAGTCTCAGTTCTCAGAGCCAGTGATGATTACCTCATTGGAGGTATATGAAAGATCTGCATCATGTTATTTCACGCGAAACATTTTCAAGAAAATTCGTAATGAGATTCAGAGGGCAGGGGCTTTGAATATCAAGGTACTAAGCACAACCTTGGACAAGGTCGAGTTCAGTGTGACTGCTCTCGGAGACCCGGCCAAAGATCGACGGGTGGAAGTCGATAGAGGTAAGAATCTGTTCTCGTGCTCGTGCAAGCTGTTTGAATCACGTGGTATTCCGTGTAGTCATGTCTTCTGTGCCATGAAGTTCGAAAACATACTTGAGTTTCCAGATTCTTTGATCTACAAAAGGTGGACAAAGAATGCAAAGAACGAATTTATTAGCACAGAAATGCCTGTGAATGATGACATCGAAAGGGTCTTAAAGTTTCGAGTTGGTGCATTGGCATCGAATTGCAACAAGCTGTGTGATATTGCTTGTAAGGATCTTGCAGACTTTGATGAAGTCCAGTCTGAACTTGTCAATTTAGTTATCCGCCTGCAGTCACGCAAACAAGGCAAGTCAACTCCTAATGTTAACGTGGAAGGCATCAACGATCCCTTTGTTGTCAAAAGCAAAGGAGCCCCTTCCAAGAGGTCTTCTTGGAGGAAGAAGAGTGCATGCTCTAATTGCCACAAGTACGGTCATTACTACAAGCACTGTCCAGATCTGATGCAGCATAGTGTGGAAGGTAACCCTTGTGATCGATCAGACGGCAATGCATCAGCCAAGGACTCAGGTTTTAGTCCAGAAAGGTTTGCTAATTCTTCGAGGTCGTTCTCAGTTAAGTCCGAACACCACTCAGGACCTAAGACCAAGCCTTTTAAAAAGAGTGGAACAAGGAAGTTTACGGCGACGGATATGAGGAACCGGAAGGGTAAAGACAACACTTTTGATGAGCGGAGCCTCCATGAAAGCAGTGAATCGATTGACATCGTGTCCACGAATGGTTTTTTCAATAAAAATCTCTACTCGTTAACACAGGTGAAGGAGTCACAGCAGGACAAGAGGCATTCATTCACGAACTATGAATGTGTTAATGATGTCATTGATGATAAATGTGACACACCACATGTGCAGATCGATGTCAGAGATTCGTTACCATCGTCACTGCCTTGTGGCAACAAACAAGGATCCCATAGATTCTTCATAGATTCTCCGTGCGTCACCAAGAAAGAAAAGACTATTGTTCTCTATGCTAAGTCATCCGTATTTGTTTTATCGAATAGCCCCTGGCCTGATCTTTGA 1905 0.4257 MSINEDDVKNDSDNNLGDDFDYQPNTEDDAEDDDVDSLDSTSKSKEVCGVKRIADLMVEDIWNLEFRTEDEACQFYNAYSCWHGFVIRKDDVVRDNQGRIISRQLVCNKEGWRNMRYLDLDDRSREARSLTRTKCPARLRTYKTRAMWSHCFLRDKFFGYIRMTSQCEGINSLIRFYVNRKNTLIDFMHNLDRALKEYRNNELIADFKSQFSEPVMITSLEVYERSASCYFTRNIFKKIRNEIQRAGALNIKVLSTTLDKVEFSVTALGDPAKDRRVEVDRGKNLFSCSCKLFESRGIPCSHVFCAMKFENILEFPDSLIYKRWTKNAKNEFISTEMPVNDDIERVLKFRVGALASNCNKLCDIACKDLADFDEVQSELVNLVIRLQSRKQGKSTPNVNVEGINDPFVVKSKGAPSKRSSWRKKSACSNCHKYGHYYKHCPDLMQHSVEGNPCDRSDGNASAKDSGFSPERFANSSRSFSVKSEHHSGPKTKPFKKSGTRKFTATDMRNRKGKDNTFDERSLHESSESIDIVSTNGFFNKNLYSLTQVKESQQDKRHSFTNYECVNDVIDDKCDTPHVQIDVRDSLPSSLPCGNKQGSHRFFIDSPCVTKKEKTIVLYAKSSVFVLSNSPWPDL* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1296 634 PANTHER OS03G0181600 PROTEIN 57 139 - -
Amo02g1296 634 PANTHER OS03G0181600 PROTEIN 142 380 - -
Amo02g1296 634 MobiDBLite consensus disorder prediction 1 16 - -
Amo02g1296 634 MobiDBLite consensus disorder prediction 499 521 - -
Amo02g1296 634 Pfam FAR1 DNA-binding domain 74 143 IPR004330 -
Amo02g1296 634 SMART 26again6 286 313 IPR006564 GO:0008270
Amo02g1296 634 ProSiteProfiles Zinc finger SWIM-type profile. 275 311 IPR007527 GO:0008270
Amo02g1296 634 MobiDBLite consensus disorder prediction 1 41 - -
Amo02g1296 634 SUPERFAMILY Retrovirus zinc finger-like domains 413 445 IPR036875 GO:0003676|GO:0008270
Amo02g1296 634 MobiDBLite consensus disorder prediction 468 482 - -
Amo02g1296 634 MobiDBLite consensus disorder prediction 22 36 - -
Amo02g1296 634 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 57 139 IPR031052 GO:0006355
Amo02g1296 634 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 142 380 IPR031052 GO:0006355
Amo02g1296 634 ProSiteProfiles Zinc finger CCHC-type profile. 427 442 IPR001878 GO:0003676|GO:0008270
Amo02g1296 634 MobiDBLite consensus disorder prediction 454 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1296 Amo-Chr2 27630080 27634326 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo02g1296 FAR1 5.9e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1296 - - aip:107640898 821.231