Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1293 ATGGGTAACTCTCACTCACATCGCAAACACCGTAACTCCCTCTCTCAAAACAATAACTCTTCTTCTTCTATTGCTACTCCTCCACACTATAGATATGGTGCTCATCATTATCCAAAACAACAACACTGTAATAGGACGATGGTGAGCAGCAAGATTTCTTTGCCTTACGGGCGCGTGGACACCACGCTCCGAGAACTCGCTGCCAAGGCCGAAGGCTTCGGACGCTTCGCCATCGGCGGCCTCCATGGTCCGCTATACCATGTCACTAATCTCGCAGATGATGGACCAGGATCACTACGCGATGCATGTCGTAGAAAAGAACCATTATGGATTGTATTTGAGGTTTCAGGCACAATTCATCTGTCATCYTATTTGAATGTATCATCTTACAAGACCATTGACYGCCGGGGCCAYAGGATTAAACTCACCGGTAAAGGYTTGCGGCTSAAGGAATGCGAGCATGTAATAGTGTGCAATTTAGAGTTTGAAGGAGGCAGAGGGCCTGATGTTGATGCCATTCAAATCAAGCCTAACTCAAAGCACATATGGATAGATCGTTGTACTCTCWGTGATTTCGAAGATGGGCTGATAGACATCACCAGAGAAAGCACAGATATTACAATTTCAAGGTGTCATTTTTCTAAGCATGACAAAACAATTCTCATTGGAGCAGATCCCTCACATGTTGGTGATAGATGCATAAGGGTCACCATTCATCATTGCTTCTTCGATGGGACTCGACAGAGGCATCCTCGCGTTCGATTTGCAAAAGTTCATCTGTATAACAATTATACCAGAAACTGGGGCATATATGCTGCTTGTGCGAGTGTGGAGTCCCAGATATTCTCGCAACATAATATTTATGAAGCAGGGCAGAAGAAGGTAGCATTCAAGTACCTTTCTGAGAAGGCAGCAGACAAGGGAGCAGAAGCAAGTGGCCGCATAATATCCGAAGGAGATTTGTTTATAAATGGAGCACAATCAGGGCTAATAGCATCTAACAATCTTGAATGTAACAATTTTCATCCTAGGGAACACTATCTGGCATGGACGGTGGAACCTCCTTCAGATGATCTAAAACAGGTTCTTCAGCATTGCACTGGATGGCAATCTATGGCGAGGCCATTAGACCAAACGGTTGAACACGGTGCACATGATGAAGCAGTACCTATTTATCCATTCCAAACTCACAGCATTGTAGCCAGTTTGCCTTATGCACGAGTGGACTCCTCCCTCCGAGCACTTGCTGGCTCGGCCGAGGGATTTGGACACTCTGCCATTGGTGGCCTCCGTGGTCCCCTTTATCATGTAACAACTCTAGCAGATGATGGACCYGGGTCGCTGCGTGARGCATGTCGCAGAAAAGATCCTTTGTGGATTGTATTTCAAGTTTCAGGCACAATTCATCTGTCTACATTTTTGAGTGTATCATCTTATAAGACCATCGATGGCCGGGGCCGAAGGATTAAACTCACCGGAAAAGGATTGCGGCTGAAGGAATGTGAGCATGTAATAATTTGTAATTTAGAGTTTGAAGGAGGCAGAGGGCCTGATAGTGATGCCATTCAGATCAAGCCTAATTCGAAGCACATATGGATAGATCGTTGCAGCCTCAGTGATTTCGATGATGGACTCATAGACATCACTAGAGAAAGCACGGATATTACCATTTCAAGGTGTCATTTTTCTAAGCACAACAAAACAATTCTCATCGGAGCAGATCCCTCGCATGTTGGGGATAGGTGCATAAGGGTCACCATTCACKACTGCTTTTTCGATGAGACTCGACAGAGGCATCCTCGTGTTAGATTTGCAAAKGTACATKTTTACAATAATTATAGCAGAAACTGGGGTATATATGCTGTTTGTGCAAGTGTGGAATCACAGATATTCTCACAACATAATATCTATGAAGCAGGGCAGAAGAAGGTGGCATTTAAGTATCTTTCTGAAAAGGCAGCAGACAAGGGAGAAGAAGCAAGTGGCCGCATAATTTCTGAAGGAGACATGTTTATAAATGGAGCACAATCAGGGCTAATGACAGAGAACAATGATGGAAGTAACATTTTTCATCCAAGTGAATATTATCCCACTTGGACAATGGAACCTTCTTCAGATAATCTAAAACAGGTTCTTCAGTACTTCACTGGATGGCAATCTATTGCCAGGCCAGAAGATTAA 2181 0.4392 MGNSHSHRKHRNSLSQNNNSSSSIATPPHYRYGAHHYPKQQHCNRTMVSSKISLPYGRVDTTLRELAAKAEGFGRFAIGGLHGPLYHVTNLADDGPGSLRDACRRKEPLWIVFEVSGTIHLSSYLNVSSYKTIDXRGHRIKLTGKGLRLKECEHVIVCNLEFEGGRGPDVDAIQIKPNSKHIWIDRCTLXDFEDGLIDITRESTDITISRCHFSKHDKTILIGADPSHVGDRCIRVTIHHCFFDGTRQRHPRVRFAKVHLYNNYTRNWGIYAACASVESQIFSQHNIYEAGQKKVAFKYLSEKAADKGAEASGRIISEGDLFINGAQSGLIASNNLECNNFHPREHYLAWTVEPPSDDLKQVLQHCTGWQSMARPLDQTVEHGAHDEAVPIYPFQTHSIVASLPYARVDSSLRALAGSAEGFGHSAIGGLRGPLYHVTTLADDGPGSLREACRRKDPLWIVFQVSGTIHLSTFLSVSSYKTIDGRGRRIKLTGKGLRLKECEHVIICNLEFEGGRGPDSDAIQIKPNSKHIWIDRCSLSDFDDGLIDITRESTDITISRCHFSKHNKTILIGADPSHVGDRCIRVTIHXCFFDETRQRHPRVRFAXVHXYNNYSRNWGIYAVCASVESQIFSQHNIYEAGQKKVAFKYLSEKAADKGEEASGRIISEGDMFINGAQSGLMTENNDGSNIFHPSEYYPTWTMEPSSDNLKQVLQYFTGWQSIARPED* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1293 726 SMART pbh1 152 177 IPR006626 -
Amo02g1293 726 SMART pbh1 528 549 IPR006626 -
Amo02g1293 726 SMART pbh1 203 224 IPR006626 -
Amo02g1293 726 SMART pbh1 552 573 IPR006626 -
Amo02g1293 726 SMART pbh1 179 200 IPR006626 -
Amo02g1293 726 SMART pbh1 501 526 IPR006626 -
Amo02g1293 726 SUPERFAMILY Pectin lyase-like 416 720 IPR011050 -
Amo02g1293 726 MobiDBLite consensus disorder prediction 13 27 - -
Amo02g1293 726 Gene3D - 56 353 IPR012334 -
Amo02g1293 726 Gene3D - 405 715 IPR012334 -
Amo02g1293 726 MobiDBLite consensus disorder prediction 1 38 - -
Amo02g1293 726 SUPERFAMILY Pectin lyase-like 68 375 IPR011050 -
Amo02g1293 726 PANTHER PECTATE LYASE 18-RELATED 50 375 IPR045032 GO:0030570
Amo02g1293 726 PANTHER PECTATE LYASE 18-RELATED 399 723 IPR045032 GO:0030570
Amo02g1293 726 SMART amb_all 81 294 IPR002022 -
Amo02g1293 726 SMART amb_all 445 643 IPR002022 -
Amo02g1293 726 PRINTS Pollen allergen Amb family signature 620 639 IPR018082 -
Amo02g1293 726 PRINTS Pollen allergen Amb family signature 473 489 IPR018082 -
Amo02g1293 726 PRINTS Pollen allergen Amb family signature 418 435 IPR018082 -
Amo02g1293 726 PANTHER PECTATE LYASE 50 375 - -
Amo02g1293 726 PANTHER PECTATE LYASE 399 723 - -
Amo02g1293 726 Pfam Pectate lyase 474 636 IPR002022 -
Amo02g1293 726 Pfam Pectate lyase 126 287 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1293 Amo-Chr2 27438252 27444451 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1293 404 726 Polysaccharide Lyase AT3G09540 66.873 1.28e-154 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1293 K01728 - ecad:122607709 1036.17