Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1256 ATGACAGTTATCAAGAGAGAAAGAGAAACAAACAATGAAAAAGAGAGCATAGATTATTTGGCAAATACCCTAATGTTGCTCTCAAGTGCCATAGAATTGAAGAGTAGTGAGAAATTCGAGTGTAAGACATGTGGCCGCAAGTTCGCATCTTTTCAAGCACTTGGTGGGCACAGAACCAGTCACAAGAGACAAAAGCATAATGGTGATCATGGTGATGAACAACAACTCAAGTCAGAGCCCAAGAAACCCAAGAAGATGCACGAGTGTTCAATTTGTGGAATGGGATTCTCTTTGGGGCAGCAATTAGGTGGCCACATGAGAAAGCACAGAGAGAATAATAATAATAAAGGGTTTTCTTCTAATCCTATAAACCATGCTGTTGTCAAAGTTCCGGTTTTGAAGAGATCGAATAGCAAGAGGGTTATGTGTATGGACTTGAACTTGACGCCATTGGAGAATGATCTCAAGTTGTTGTTTGGAAACAAGGCACCACGAGTTGATCTTTCTTTCTTGTGA 516 0.405 MTVIKRERETNNEKESIDYLANTLMLLSSAIELKSSEKFECKTCGRKFASFQALGGHRTSHKRQKHNGDHGDEQQLKSEPKKPKKMHECSICGMGFSLGQQLGGHMRKHRENNNNKGFSSNPINHAVVKVPVLKRSNSKRVMCMDLNLTPLENDLKLLFGNKAPRVDLSFL* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1256 171 Gene3D Classic Zinc Finger 34 122 - -
Amo02g1256 171 MobiDBLite consensus disorder prediction 65 83 - -
Amo02g1256 171 SUPERFAMILY beta-beta-alpha zinc fingers 38 109 IPR036236 -
Amo02g1256 171 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Amo02g1256 171 MobiDBLite consensus disorder prediction 54 83 - -
Amo02g1256 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Amo02g1256 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Amo02g1256 171 SMART c2h2final6 87 109 IPR013087 -
Amo02g1256 171 SMART c2h2final6 39 61 IPR013087 -
Amo02g1256 171 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Amo02g1256 171 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 5 165 - -
Amo02g1256 171 Pfam C2H2-type zinc finger 87 111 - -
Amo02g1256 171 Pfam C2H2-type zinc finger 39 64 - -
Amo02g1256 171 PANTHER ZINC FINGER PROTEIN ZAT5 5 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1256 Amo-Chr2 26116664 26117371 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1256 4 171 C2H2 Transcription Factor Family AT2G37430 42.857 6.41e-40 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo02g1256 zf-C2H2_6 5.2e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1256 - - gmx:100526874 199.904