Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1252 ATGAAAAGACAACGAGATCATCAAGTAATAATGGATAGTAATAGCATTGACTTGGCACAATGTCTAATGCTACTTTCTCATCAAAACCCTAAAGATCAAAGCAAAGTCCACCATTATCATCGTCAGAAACATTTTCGCCCAACGGAATTTGAGTGTAGCACATGCAACCGCAAATTCTCTTCATTTCAAGCCCTTGGTGGTCACAAAGCTAGCCACAAGAAACAAAAGATGGAGAAGAATAACAAAGAAGAAGCCACAACTACTCTCAGCTTAGGAGTAGGGAACAATAATAACGTTTTTATTAACAAACCCAATAAAATGCATGAGTGTTCAATTTGTGGTCAAAGATTCTCTCAAGGGCAAGCACTTGGAGGGCACATGAGAAAGCATAGACTACATGCCAATCAAGAAACGTTTCTAATTCCTTCTATAAACGACGTCGTCCTGGGAAAAATCCCACCAGTTCTAAAGAGATCTAATAGCTTCAGGGTTATGTGTTTGGATTTGAACCTAACACCTCTGCAGAATGATTTAAAGGTATTGTTTGGAAACATGGCACCAAAAGTTGATCCTAGCTGGGTTTGA 585 0.3897 MKRQRDHQVIMDSNSIDLAQCLMLLSHQNPKDQSKVHHYHRQKHFRPTEFECSTCNRKFSSFQALGGHKASHKKQKMEKNNKEEATTTLSLGVGNNNNVFINKPNKMHECSICGQRFSQGQALGGHMRKHRLHANQETFLIPSINDVVLGKIPPVLKRSNSFRVMCLDLNLTPLQNDLKVLFGNMAPKVDPSWV* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1252 194 Pfam C2H2-type zinc finger 50 75 - -
Amo02g1252 194 Pfam C2H2-type zinc finger 108 131 - -
Amo02g1252 194 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 138 IPR013087 -
Amo02g1252 194 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 77 IPR013087 -
Amo02g1252 194 SUPERFAMILY beta-beta-alpha zinc fingers 105 132 IPR036236 -
Amo02g1252 194 PANTHER ZINC FINGER PROTEIN ZAT5 1 191 - -
Amo02g1252 194 Gene3D Classic Zinc Finger 48 130 - -
Amo02g1252 194 SUPERFAMILY beta-beta-alpha zinc fingers 48 77 IPR036236 -
Amo02g1252 194 SMART c2h2final6 108 130 IPR013087 -
Amo02g1252 194 SMART c2h2final6 50 72 IPR013087 -
Amo02g1252 194 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Amo02g1252 194 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 1 191 - -
Amo02g1252 194 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1252 Amo-Chr2 26086770 26087519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1252 1 194 C2H2 Transcription Factor Family AT2G37430 44.444 3.24e-42 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo02g1252 zf-C2H2_6 4.7e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1252 - - aip:107627118 369.392