Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1248 ATGCAAAAGAGAAGGTTGTTACTTGTTAGTGGATTAGCAACTTATTTGGCAGGGTGGGACTGTTTCGGCTATGACATTAGATGTGGGAATACTTCTTGGGGATCCGCAATTGGATTCAAGTTGGATAGTCTTTTAAAGCTTACTGACACTTGTGCTTCTAACAATAAGATGACACTGATGCACTATATTTGCAAGGTGGGAGCTCCTGAGATTGTTCCAGATTATCCAATTCTTTCTGTTGACGACCTAGCAGATCAAATAGTCGAGGTTTTCAACTTTTTTGGTCTTAGTGCAGTAATGTGCATAGGAGTAGCTGCCGGGGCTTACATTCTTACCTTATTTGCTTTAGCTTATAACTTCTCACTGCTCCAGCTCTTCCGTGGCGACACTATCCTCATCAAGGGCAAGAAAAGGAAGGATACTGTTTGCATAGCTCTTGCTGATGACACCTGTGAAGAGCCCAAGATCAGGATGAACAAAGTTGTGAGGTCGAATTTGCGGGTTCGTCTTGGAGATGTTGTGTCCGTGCACCAGTTCTCTGATGTGAAGTATGGGAAACATGTGCACATTCTGCCTATTGATGATACCATTGAAGGTGTCACTGGCAATCTGTTTGATGCTTTCTTGAAACATCTATTTCTTGTCCATGGAGGGATGAGAAGTGTGGAGTTTAAGGATGAAGAGAGGCTGGATGAAGTTGGATATGATGATGTGGGTGGAGTCAGGAAACAAATGGCACAAATTCGTGAGTTGGTAGAGCTTCCCTTGAGGCATCCACAACTCTTTAAGTCGATTGGTGTGAAACCACTCAAAGGTATTCTACTTTATGGACCCCCTGGTTCCGGGAAGACAGTGATAGCAAGAGCTGTTGCTAATGAAACGGGAGCTTTCTTCTTTTATATAAATGGACCGGAGATTATGTCCAAACTGGTAGGAGAGAGTGAAAGCAATATGAGGAAAGCATTTGAAGAGGCTGAAAAGAATGCACCATCCATCATCTTCATTGATGAAATCGATTCTATTGCACCCAAGAGGGAGAAGACACATGCTACCAATCGCCCAAACAGCATTGACCCAGCATTGAGAAGGTTCGATAGATTTGATAGGGAAATTGATATTGGTGTTCCTGATGAAGTTGGCCGACTTGAAGTTCTTCGTATACACACTAAAAACATGAAGCTCTCTGATGATGTTGTTCATTAA 1203 0.4264 MQKRRLLLVSGLATYLAGWDCFGYDIRCGNTSWGSAIGFKLDSLLKLTDTCASNNKMTLMHYICKVGAPEIVPDYPILSVDDLADQIVEVFNFFGLSAVMCIGVAAGAYILTLFALAYNFSLLQLFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQFSDVKYGKHVHILPIDDTIEGVTGNLFDAFLKHLFLVHGGMRSVEFKDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPLKGILLYGPPGSGKTVIARAVANETGAFFFYINGPEIMSKLVGESESNMRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHATNRPNSIDPALRRFDRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVVH* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1248 400 Gene3D - 118 181 - -
Amo02g1248 400 Pfam Formin Homology 2 Domain 32 66 IPR015425 -
Amo02g1248 400 SMART AAA_5 269 377 IPR003593 -
Amo02g1248 400 PANTHER CELL DIVISION CONTROL PROTEIN 48 HOMOLOG E 350 398 - -
Amo02g1248 400 Pfam Ndr family 66 123 IPR004142 -
Amo02g1248 400 Gene3D - 376 398 - -
Amo02g1248 400 CDD AAA 239 374 - -
Amo02g1248 400 SUPERFAMILY Formin homology 2 domain (FH2 domain) 30 66 - -
Amo02g1248 400 Gene3D Formin, FH2 domain 27 94 IPR042201 -
Amo02g1248 400 Gene3D - 350 375 IPR027417 -
Amo02g1248 400 Gene3D - 233 349 IPR027417 -
Amo02g1248 400 PANTHER CELL DIVISION CONTROL PROTEIN 48 HOMOLOG E 119 215 - -
Amo02g1248 400 PANTHER AAA-FAMILY ATPASE 221 349 - -
Amo02g1248 400 PANTHER AAA-FAMILY ATPASE 350 398 - -
Amo02g1248 400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 232 398 IPR027417 -
Amo02g1248 400 SUPERFAMILY ADC-like 122 178 IPR009010 -
Amo02g1248 400 PANTHER AAA-FAMILY ATPASE 119 215 - -
Amo02g1248 400 Pfam Cell division protein 48 (CDC48), N-terminal domain 120 180 IPR003338 -
Amo02g1248 400 Gene3D - 182 232 - -
Amo02g1248 400 PANTHER CELL DIVISION CONTROL PROTEIN 48 HOMOLOG E 221 349 - -
Amo02g1248 400 SMART CDC48_N_2 102 182 IPR003338 -
Amo02g1248 400 SUPERFAMILY alpha/beta-Hydrolases 15 119 IPR029058 -
Amo02g1248 400 Pfam ATPase family associated with various cellular activities (AAA) 273 346 IPR003959 GO:0005524|GO:0016887
Amo02g1248 400 SUPERFAMILY Cdc48 domain 2-like 181 225 IPR029067 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1248 Amo-Chr2 25282194 25285769 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1248 232 398 Calmodulin-binding Proteins AT3G56690 42.132 8.53e-41 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1248 K13525 - aip:107621123 588.571