Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1208 ATGCAGAGGCGTCGAGATAGAATTAATGAAAGGATGAGAGCTTTGCAAGAACTTATACCTCGGTGCAACAAGTCTAACAAAGCATCCATGCTGGATGAACCAATCGAATACATGAAGTCACTAAAGTTACAAGTACAGGTATATTCATTTCTTCTTTCCTCAGACCAATTTACTTGTGCAGATGATGTCCATGGGATGCAGCATGCTACCGATGATGTTCTCCGGAATCCAGCAGTATATATGTGTGTGGTTAATAATTCCTAG 264 0.4053 MQRRRDRINERMRALQELIPRCNKSNKASMLDEPIEYMKSLKLQVQVYSFLLSSDQFTCADDVHGMQHATDDVLRNPAVYMCVVNNS* 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1208 87 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 41 IPR011598 GO:0046983
Amo02g1208 87 SMART finulus 2 47 IPR011598 GO:0046983
Amo02g1208 87 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 3 50 IPR031066 -
Amo02g1208 87 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 2 56 IPR036638 GO:0046983
Amo02g1208 87 Pfam Helix-loop-helix DNA-binding domain 2 42 IPR011598 GO:0046983
Amo02g1208 87 Gene3D - 2 49 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1208 Amo-Chr2 22396481 22397427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1208 2 51 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 82.000 1.07e-22 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo02g1208 HLH 9.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1208 - - nsy:104236611 84.3445