Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1184 ATGGCGACGGCAGCGGCGTCACGGCGGCTTCGGGATCTGCAGTCCCAACCAGCAAACAAGATCTGCGTAGACTGCTCCCAGAAGAACCCGCAGTGGGCCTCCGTCTCCTACGGCGTCTTCATGTGCCTCGAGTGCTCCGGCAAGCACCGCGGCCTCGGCGTGCACATCTCCTTCGTCCGATCCGTCACCATGGACGCATGGTCCGAAATCCAGCTCAAGAAGATGGAAGCTGGCGGCAACAATAACCTCAACTCCTTCCTCGCCTCTTATTCTGTTCCCAAGGAAACTGATATAGTTAAGAAGTACAACACCAAAGCCGCCGCTATCTACCGTGATCGCATCGCCGCAATTGCCGAAGGGCGGCCGTGGCGCGATCCGCCTGTTCAGAGGGAGGATCTCGCTGGAGGATTCGCTGCTGGAAAGGGAAAGCCTCCGATGAACGGCGGGGGAGGAGGGAACAAGCGGAATGACGGCGATTGGGAGGATTGGGGAACCGATGATGGTTTCGGCGGGGATTTGCGACGGAATCAGTCTGCTGGCGATGTGAGAAGTGTTGGCGGTGGCGGTGCTGTGGCGGGGAGGTCTAAGTCGAGTGAGGATATTTACACGCGGTCGCAGCTTGAGGCTTCGGCGGCTAACAAGGAGAGCTTCTTCGCGAGGAAGATGGCGGAGAATGAGTCGCGGCCGGAGGGGCTTCCGCCGTCGAAGGGAGGGAAATACGTCGTCTCTCAAGTAGACGTTGCAAGCGACCGAGTCTTCAGTCATCTGCATATCGTCAACATTCACCATTTTATTCGGTCTGTTGTGTGCAATTTCCACGGGTTTGGTAAATTATCGTTGGCGGCTCAGACTGCTGCTTCTAAGGTCAAAGAAGGTGGTTATGATCAAAAAGTCAATGATGTCACTCAGAAGACATGGGGTATAATGAAAGGTGTCATAGCTATGGCTTCAGAGAAGGTAGAAGAGTACACCAGAGATGGCTCAAATGGAATGAACAATAATTGGCAACAAAATGAGAGTGGCAGGAATGGTTACCATCAGGATTTCAATCAACAGAACCAGGGATGGAATTCTTCTACCAGAACTGAACAATCCTCTTCTAAGCAATTTAACACCCACAGCTCAAGTTCTTGGGATGATTGGAACAATAAAGGTAGTAGGAATGGAAAACCAGCAAATGGATCAACAACTCAAAATTCAAGCTCTTGGGATGATTGGGGGCACAAAGGTTCCAGGAAGGAAGAACCAGCGAGAGGATCGGCGGCAAATAACGACGATGGATGGGCTGGCTGGGATGATGACAAAGATGATGGATTTGATCATTCTTATTATGAAGGTGGATCTAAAGATAAGAAAGGTGTTACTAACTATGGGAAATCCGATGGTGGCTGGACAGGGGCAGGCTTTGCCTAA 1413 0.5173 MATAAASRRLRDLQSQPANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDAWSEIQLKKMEAGGNNNLNSFLASYSVPKETDIVKKYNTKAAAIYRDRIAAIAEGRPWRDPPVQREDLAGGFAAGKGKPPMNGGGGGNKRNDGDWEDWGTDDGFGGDLRRNQSAGDVRSVGGGGAVAGRSKSSEDIYTRSQLEASAANKESFFARKMAENESRPEGLPPSKGGKYVVSQVDVASDRVFSHLHIVNIHHFIRSVVCNFHGFGKLSLAAQTAASKVKEGGYDQKVNDVTQKTWGIMKGVIAMASEKVEEYTRDGSNGMNNNWQQNESGRNGYHQDFNQQNQGWNSSTRTEQSSSKQFNTHSSSSWDDWNNKGSRNGKPANGSTTQNSSSWDDWGHKGSRKEEPARGSAANNDDGWAGWDDDKDDGFDHSYYEGGSKDKKGVTNYGKSDGGWTGAGFA* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1184 470 SMART arf_gap_3 4 123 IPR001164 GO:0005096
Amo02g1184 470 Gene3D Arf GTPase activating protein 1 127 IPR038508 -
Amo02g1184 470 MobiDBLite consensus disorder prediction 324 470 - -
Amo02g1184 470 MobiDBLite consensus disorder prediction 406 420 - -
Amo02g1184 470 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 4 400 IPR044519 GO:0005096|GO:0016192
Amo02g1184 470 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 395 469 IPR044519 GO:0005096|GO:0016192
Amo02g1184 470 PRINTS HIV Rev interacting protein signature 59 80 IPR001164 GO:0005096
Amo02g1184 470 PRINTS HIV Rev interacting protein signature 38 55 IPR001164 GO:0005096
Amo02g1184 470 PRINTS HIV Rev interacting protein signature 19 38 IPR001164 GO:0005096
Amo02g1184 470 SUPERFAMILY ArfGap/RecO-like zinc finger 8 115 IPR037278 -
Amo02g1184 470 Pfam Putative GTPase activating protein for Arf 8 105 IPR001164 GO:0005096
Amo02g1184 470 MobiDBLite consensus disorder prediction 434 456 - -
Amo02g1184 470 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 4 400 - -
Amo02g1184 470 ProSiteProfiles ARF GTPase-activating proteins domain profile. 7 123 IPR001164 GO:0005096
Amo02g1184 470 CDD ArfGap_ArfGap1 6 120 - -
Amo02g1184 470 MobiDBLite consensus disorder prediction 173 199 - -
Amo02g1184 470 MobiDBLite consensus disorder prediction 326 405 - -
Amo02g1184 470 MobiDBLite consensus disorder prediction 136 159 - -
Amo02g1184 470 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 395 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1184 Amo-Chr2 21238070 21240448 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1184 8 90 C2H2 Transcription Factor Family AT4G05330 51.190 4.25e-23 98.2