Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g1161 ATGGTTTCTTTTGGAAGTTGTAGTATTTATAGAAGAACAGAGAATCGTTTTCTTATGTGTTCAATTCTCAAATTTCATAGCATATACGGTTCCTTTAAATTCTTTCATTCTAAACTTAACCGGGGTTCCAGTGCTTCAGATAAAACCCCCAAACTGGAACCAAATAGGAATAATCACAATAGGGTAGGGATTTTCTGGGACTTAGATAACAAGCCACCAAACCCAATTCCACCTTATGAAGTTGCCAATAAGCTTAGAATTGTTGCATCTTCATTTGGGGTTGTTAGGCATATGGTAGCTTATGCAAATAGCCACACTTTCAGCAGTGTCCCACACGCTGTCCGGCAGAGGAGGAAAGAGAAGGAGCTGTATAATCGACTGGAGAGCAAGGGCGTCATCAAGCGGAATGAGCCTCATGTTTGCAGGGTTTGTGGGAGAAAGTTCTACACTAATGAGAAGCTTGTTAACCATTTCAAGCAGCTACATGAGAGCGAGCAAACAAAAAGGGTAAACCAAATAGCGTCTGCAAGGGGGAGCCGGAGGGTGAAGTTGGTGGCGAAGTATTCGATGAAGATGGAGAAATATAAGAAGGCTGCAAGGGATATTCTTACTCCAAGAGTAGGGTATGGTTTGGCGGATGAGCTGAAACGCGCAGGATTTTGGGTTCAGACCGTGTTGGATAAGCCAGAGGCTGCGGATCATGCATTGGAAAGTCACATGGTTGATATGATGGATCATAGGAGGGTTGAGTGCATAGTACTTGTGTCTGATGATTATGATTTCGCTAATGTAATAAGGGAAGCGAAGCTACGATGTCTGAAGACAGTTGTCGTTGGGGATACTAGTGATGGTGTATTGAAGAGGATTGCTGATACGTCCTTTTCTTGGGAGGAAATCCTAATGGGGAAAGCTAAAAAGGAGGCTGTATCAGTTGTCGAGAATTGGAAGGATCGTGATATTTTGAAAAGGTTAGAGTGGACATACAATCCAGAGGTGGATAAAAAGAAATACGATCCGGCTGATGTGGTTATTGAAGAATCAGAAGATGAGAATATTGAAGATATTTGTGATAATGTTGATGATGACTATAAGGATGGTGGAGGTGCTTGGTGGGAGTTAGATTCAGATGAAAATGTCACAAATGAACAGACACCAAAAGTATAG 1164 0.4201 MVSFGSCSIYRRTENRFLMCSILKFHSIYGSFKFFHSKLNRGSSASDKTPKLEPNRNNHNRVGIFWDLDNKPPNPIPPYEVANKLRIVASSFGVVRHMVAYANSHTFSSVPHAVRQRRKEKELYNRLESKGVIKRNEPHVCRVCGRKFYTNEKLVNHFKQLHESEQTKRVNQIASARGSRRVKLVAKYSMKMEKYKKAARDILTPRVGYGLADELKRAGFWVQTVLDKPEAADHALESHMVDMMDHRRVECIVLVSDDYDFANVIREAKLRCLKTVVVGDTSDGVLKRIADTSFSWEEILMGKAKKEAVSVVENWKDRDILKRLEWTYNPEVDKKKYDPADVVIEESEDENIEDICDNVDDDYKDGGGAWWELDSDENVTNEQTPKV* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g1161 387 Gene3D - 54 300 - -
Amo02g1161 387 CDD PIN_LabA-like 149 280 - -
Amo02g1161 387 Pfam NYN domain 211 292 IPR021139 GO:0004540
Amo02g1161 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 167 IPR013087 -
Amo02g1161 387 PANTHER - 37 380 - -
Amo02g1161 387 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 37 380 - -
Amo02g1161 387 ProSitePatterns Zinc finger C2H2 type domain signature. 141 162 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g1161 Amo-Chr2 20345801 20347671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g1161 43 384 C2H2 Transcription Factor Family AT4G12240 55.398 8.60e-140 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo02g1161 NYN 9.8e-07 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g1161 - - lang:109328008 545.814